Standardised access to Identifier Mappings

BridgeDb is a framework to map identifiers between various biological databases and related resources. These mappings are provided for genes, proteins, metabolites, metabolic reactions, diseases, complexes and publications. BridgeDb includes a Java library that provides an API for programmatic access.

NEWS: Find the demo of the BridgeDb Shiny app here to map outdated identifiers!

Framework and libraries

Identifier Mapping Databases

Tutorials and Workflows

Webservice and API

Webservice implementation
Docker and semantic web



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How to cite

Contributing organisations