data

Name: Ag_Derby_Ensembl_Metazoa_39.bridge
License: https://zenodo.org/record/3667670/files/LICENSE?download=1
Keywords: BridgeDb, mapping file, identifier, ELIXIR RIR, Anopheles gambiae, gene, protein

When using these files in studies, please cite the data following the DataCite standard. And thanks to Zenodo and Figshare for hosting the data.

Requests for additional identifier mapping files can be posted here.

Gene / Protein ID mapping databases

JSON source

Species	BridgeDb Download	QC report	Size	DOI	License	Date	Tested with
Anopheles gambiae (ncbitaxon:7165)	Ag_Derby_Ensembl_Metazoa_39.bridge			(doi:10.5281/zenodo.3667670)	license
Aspergillus niger (ncbitaxon:5061)	An_Derby_Ensembl_Fungi_32.bridge		25.3 MB	(doi:10.5281/zenodo.5638771)	license		PathVisio 3.3
Arabidopsis thaliana (ncbitaxon:3702)	At_Derby_Ensembl_Plant_39.bridge			(doi:10.5281/zenodo.3667670)	license
Bacillus subtilis (ncbitaxon:1423)	Bs_Derby_Ensembl_91.bridge			(doi:10.5281/zenodo.3667670)	license
Bos taurus (ncbitaxon:9913)	Bt_Derby_Ensembl_104.bridge	QC	153.2 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Caenorhabditis elegans (ncbitaxon:6239)	Ce_Derby_Ensembl_104.bridge	QC	176.3 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Canis familiaris (ncbitaxon:9615)	Cf_Derby_Ensembl_104.bridge	QC	152.5 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Ciona intestinalis (ncbitaxon:7719)	Ci_Derby_Ensembl_104.bridge	QC	32.7 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Danio rerio (ncbitaxon:7955)	Dr_Derby_Ensembl_104.bridge	QC	269.5 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Daphnia magna (ncbitaxon:35525)	Da_Derby_Ensembl_Metazoa_49.bridge		44.6 MB	(doi:10.5281/zenodo.6500401)	license	2022-04-28	PathVisio 3.3
Daphnia pulex (ncbitaxon:6669)	Dp_Derby_Ensembl_Metazoa_49.bridge		59.4 MB	(doi:10.5281/zenodo.6500401)	license	2022-04-28	PathVisio 3.3
Drosophila melanogaster (ncbitaxon:7227)	Dm_Derby_Ensembl_104.bridge	QC	87.9 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Escherichia coli (ncbitaxon:562)	Ec_Derby_Ensembl_91.bridge			(doi:10.5281/zenodo.3667670)	license
Equus caballus (ncbitaxon:9796)	Qc_Derby_Ensembl_104.bridge	QC	176.7 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Gallus gallus (ncbitaxon:9031)	Gg_Derby_Ensembl_104.bridge	QC	129.3 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Glycine max (ncbitaxon:3847)	Gm_Derby_Ensembl_Plant_32.bridge		162.1 MB	(doi:10.5281/zenodo.5638771)	license
Gibberella zeae	Gz_Derby_Ensembl_Fungi_39.bridge			(doi:10.5281/zenodo.3667670)	license
Homo sapiens (ncbitaxon:9606)	Hs_Derby_Ensembl_104.bridge	QC	793.2 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Hordeum vulgare (ncbitaxon:4513)	Hv_Derby_Ensembl_Plant_32.bridge		77.1 MB	(doi:10.5281/zenodo.5638771)	license
Macaca mulatta (ncbitaxon:9544)	Ml_Derby_Ensembl_104.bridge	QC	277.1 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Mus musculus (ncbitaxon:10090)	Mm_Derby_Ensembl_104.bridge	QC	410.6 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Mycobacterium tuberculosis (ncbitaxon:1773)	Mx_Derby_Ensembl_85.bridge		11.5 MB	(doi:10.5281/zenodo.5638771)	license
Ornithorhynchus anatinus (ncbitaxon:9258)	Oa_Derby_Ensembl_104.bridge	QC	88.9 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Oryza indica	Oi_Derby_Ensembl_Plant_32.bridge		124.6 MB	(doi:10.5281/zenodo.5638771)	license
Oryza japonica	Oj_Derby_Ensembl_Plant_39.bridge			(doi:10.5281/zenodo.3667670)	license
Ovis aries (ncbitaxon:9940)	Ova_Derby_Ensembl_104.bridge	QC	95.4 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Pan troglodytes (ncbitaxon:9598)	Pt_Derby_Ensembl_104.bridge	QC	370.1 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Populus trichocarpa (ncbitaxon:3694)	Pi_Derby_Ensembl_Plant_32.bridge		212.5 MB	(doi:10.5281/zenodo.5638771)	license
Rattus norvegicus (ncbitaxon:10116)	Rn_Derby_Ensembl_104.bridge	QC	289.2 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Saccharomyces cerevisiae (ncbitaxon:4932)	Sc_Derby_Ensembl_104.bridge	QC	35.0 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Solanum lycopersicum (ncbitaxon:4081)	Sl_Derby_Ensembl_Plant_32.bridge		59.0 MB	(doi:10.5281/zenodo.5638771)	license
Sus scrofa (ncbitaxon:9823)	Ss_Derby_Ensembl_104.bridge	QC	161.7 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Vitis vinifera (ncbitaxon:29760)	Vv_Derby_Ensembl_Plant_32.bridge		109.7 MB	(doi:10.5281/zenodo.5638771)	license
Xenopus tropicalis (ncbitaxon:8364)	Xt_Derby_Ensembl_104.bridge	QC	105.5 MB	(doi:10.5281/zenodo.6367091)	license	2022-03-18	PathVisio 3.3
Zea mays (ncbitaxon:4577)	Zm_Derby_Ensembl_Plant_39.bridge			(doi:10.5281/zenodo.3667670)	license

Coronavirus gene/protein identifiers

JSON source

Species	BridgeDb Download	QC report	Size	DOI	License	Date	Tested with
Human Coronaviruses	humancorona-2021-11-27.bridge		2.1 MB	(doi:10.5281/zenodo.5734440)	CC0	2021-11-27

Other ID mapping databases

JSON source

type	BridgeDb Download	Size	DOI	License	Date	Tested with
Complexes	complexes-2023-02-09.bridge	12.5 MB	(doi:10.5281/zenodo.7625357)	CC0	2023-02-09
Interactions	interactions20210109.bridge	17.13 MB	(doi:10.6084/m9.figshare.13551176)	CC0	2021-01-09
Metabolites	metabolites_20220707.bridge	2.59 GB	(doi:10.6084/m9.figshare.20260911)	CC0	2022-07-07	PathVisio 3.3
Publications	publications_20211116.bridge	23.62 MB	(doi:10.6084/m9.figshare.17027795.v1)	CC0	2021-11-16