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Gene / Protein ID mapping databases

JSON source

Species BridgeDb Download QC report Size License Date Tested with
Anopheles gambiae (ncbitaxon:7165) Ag_Derby_Ensembl_Metazoa_52.bridge (doi:10.5281/zenodo.7327722) QC 42.9 MB license 2023-01-06 PathVisio 3.3
Aspergillus niger (ncbitaxon:5061) An_Derby_Ensembl_Fungi_52.bridge (doi:10.5281/zenodo.7781891) QC 34.3 MB license 2023-03-30 PathVisio 3.3
Arabidopsis thaliana (ncbitaxon:3702) At_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 213.4 MB license 2023-03-31 PathVisio 3.3
Bacillus subtilis (ncbitaxon:1423) Bs_Derby_Ensembl_91.bridge (doi:10.5281/zenodo.3667670)   8.2 MB license 2020-02-14  
Bos taurus (ncbitaxon:9913) Bt_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 153.5 MB license 2023-03-31 PathVisio 3.3
Caenorhabditis elegans (ncbitaxon:6239) Ce_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 208.9 MB license 2023-03-31 PathVisio 3.3
Canis familiaris (ncbitaxon:9615) Cf_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 162.4 MB license 2023-03-31 PathVisio 3.3
Ciona intestinalis (ncbitaxon:7719) Ci_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 32.9 MB license 2023-03-31 PathVisio 3.3
Danio rerio (ncbitaxon:7955) Dr_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 272.0 MB license 2023-03-31 PathVisio 3.3
Daphnia magna (ncbitaxon:35525) Da_Derby_Ensembl_Metazoa_52.bridge (doi:10.5281/zenodo.7327722) QC 45.5 MB license 2023-01-06 PathVisio 3.3
Daphnia pulex (ncbitaxon:6669) Dp_Derby_Ensembl_Metazoa_52.bridge (doi:10.5281/zenodo.7327722) QC 60.8 MB license 2023-01-06 PathVisio 3.3
Drosophila melanogaster (ncbitaxon:7227) Dm_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 122.4 MB license 2023-03-31 PathVisio 3.3
Escherichia coli (ncbitaxon:562) Ec_Derby_Ensembl_91.bridge (doi:10.5281/zenodo.3667670)   12.6 MB license 2020-02-14  
Equus caballus (ncbitaxon:9796) Qc_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 181.5 MB license 2023-03-31 PathVisio 3.3
Gallus gallus (ncbitaxon:9031) Gg_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 140.3 MB license 2023-03-31 PathVisio 3.3
Glycine max (ncbitaxon:3847) Gm_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 239.1 MB license 2023-03-31 PathVisio 3.3
Fusarium graminearum (ncbitaxon:5518) Fg_Derby_Ensembl_Fungi_52.bridge (doi:10.5281/zenodo.7781891) QC 20.9 MB license 2023-03-30 PathVisio 3.3
Homo sapiens (ncbitaxon:9606) Hs_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 839.3 MB license 2023-03-31 PathVisio 3.3
Hordeum vulgare (ncbitaxon:4513) Hv_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 66.8 MB license 2023-03-31 PathVisio 3.3
Macaca mulatta (ncbitaxon:9544) Ml_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 279.0 MB license 2023-03-31 PathVisio 3.3
Mus musculus (ncbitaxon:10090) Mm_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 478.2 MB license 2023-03-31 PathVisio 3.3
Mycobacterium tuberculosis (ncbitaxon:1773) Mx_Derby_Ensembl_85.bridge (doi:10.5281/zenodo.5638771)   11.5 MB license 2021-11-02  
Ornithorhynchus anatinus (ncbitaxon:9258) Oa_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 98.6 MB license 2023-03-31 PathVisio 3.3
Oryza indica Oi_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 100.3 MB license 2023-03-31 PathVisio 3.3
Oryza japonica (ncbitaxon:39947) Oj_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 144.6 MB license 2023-03-31 PathVisio 3.3
Ovis aries (ncbitaxon:9940) Ova_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 98.1 MB license 2023-03-31 PathVisio 3.3
Pan troglodytes (ncbitaxon:9598) Pt_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 365.0 MB license 2023-03-31 PathVisio 3.3
Populus trichocarpa (ncbitaxon:3694) Pi_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 161.8 MB license 2023-03-31 PathVisio 3.3
Rattus norvegicus (ncbitaxon:10116) Rn_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 303.1 MB license 2023-03-31 PathVisio 3.3
Saccharomyces cerevisiae (ncbitaxon:4932) Sc_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 41.7 MB license 2023-03-31 PathVisio 3.3
Solanum lycopersicum (ncbitaxon:4081) Sl_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 106.5 MB license 2023-03-31 PathVisio 3.3
Sus scrofa (ncbitaxon:9823) Ss_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 183.2 MB license 2023-03-11 PathVisio 3.3
Vitis vinifera (ncbitaxon:29760) Vv_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 129.1 MB license 2023-03-31 PathVisio 3.3
Xenopus tropicalis (ncbitaxon:8364) Xt_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913) QC 118.5 MB license 2023-03-31 PathVisio 3.3
Zea mays (ncbitaxon:4577) Zm_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895) QC 192.8 MB license 2023-03-31 PathVisio 3.3

Coronavirus gene/protein identifiers

JSON source

Species BridgeDb Download QC report Size License Date Tested with
Human Coronaviruses humancorona-2021-11-27.bridge (doi:10.5281/zenodo.5734440)   2.1 MB CC0 2021-11-27  

Other ID mapping databases

JSON source

type BridgeDb Download QC report Size License Date Tested with
Complexes complexes-2023-02-09.bridge (doi:10.5281/zenodo.7625357)   12.5 MB CC0 2023-02-09  
Genes genes_20230506.bridge (doi:10.5281/zenodo.7902769)   95.1 MB CC0 2023-05-06  
Interactions interactions20210109.bridge (doi:10.6084/m9.figshare.13551176)   17.13 MB CC0 2021-01-09  
Metabolites metabolites_20220707.bridge (doi:10.6084/m9.figshare.20260911)   2.59 GB CC0 2022-07-07 PathVisio 3.3
Pathways pathways_20211211.bridge (doi:10.5281/zenodo.5773822)   2.4 MB CC0 2021-12-11  
Publications publications_20230428.bridge (doi:10.6084/m9.figshare.22720564.v1) QC 25.7 MB CC0 2023-04-28