Availability

The CyThesaurus plugin for Cytoscape makes use of BridgeDb API to translate identifiers in Cytoscape networks. The plugin is available in the standard plugin repository of Cytoscape, and can be installed using the Cytoscape Plugin Manager.

Tutorial

You can try it by following the step-by-step instructions here:  http://www.cytoscape.org/cgi-bin/moin.cgi/CyThesaurus_Plugin/ID_Mapping_Examples

Documentation

• The official documentation for this plugin on the Cytoscape wiki:  http://www.cytoscape.org/cgi-bin/moin.cgi/CyThesaurus_Plugin/
• Original specification with some unimplemented ideas: CytoscapePluginSpec
• GSoC09 project page:  http://socrates2.cgl.ucsf.edu/GenMAPP/wiki/Google_Summer_of_Code_2009/Jianjiong

Source code

The source code of this plugin is available at  http://chianti.ucsd.edu/svn/csplugins/trunk/soc/jgao/IDMapping/