Timeline


and .

06/24/10:

21:00 Changeset [418] by AlexanderPico
added Kg and Bc to build step
20:47 Changeset [417] by AlexanderPico
added gene wiki to build step

06/23/10:

23:32 Changeset [416] by AlexanderPico
modified categorization
23:30 Changeset [415] by AlexanderPico
23:29 Changeset [414] by AlexanderPico
added funcgen dl
23:16 Changeset [413] by AlexanderPico
added release variable

06/22/10:

17:30 Changeset [412] by rodche
Modified and temporarily disabled biomart (was down) tests; …

06/17/10:

11:43 Changeset [411] by martijn
Benchmarks: Added reference to measure module back
11:43 Changeset [410] by martijn
Remove generated file BridgeDb?.properties from repository

06/14/10:

14:36 Changeset [409] by martijn
Extra utility method, more documentation of utility methods

06/11/10:

19:05 Changeset [408] by bturner
Convert all db calls to follow canonical pattern of resource usage.
16:48 Changeset [407] by bturner
16:47 Changeset [406] by bturner
16:39 Changeset [405] by bturner
start of connection pooling
16:35 Changeset [404] by bturner

06/10/10:

15:08 Changeset [403] by martijn
Quality Control tool for checking quality of new BridgeDerby builds. Put …
13:16 Changeset [402] by martijn
Fixed failed test in synergizer by not supporting xrefExists anymore. This …

06/09/10:

13:03 Ticket #69 (IDMapper for mirbase, to map between mature<->immature miRNA) created by martijn
Request for an IDMapper for mirbase. This is in particularly useful …

06/04/10:

19:03 Changeset [401] by rodche
only ToDo? updated (was a mistake)
17:09 Changeset [400] by rodche
mavenized ..webservice.synergizer (test fails due to the …
16:55 Ticket #68 (error in org.bridgedb.webservice.synergizer.Tests) created by rodche
The test fails, probably, because the synergizer service does not support …
06:26 Changeset [399] by AlexanderPico

06/03/10:

01:59 Changeset [398] by AlexanderPico
updating HUGO

06/02/10:

22:19 Changeset [397] by bturner
Need to handle case where user doesn't have config file.
21:12 Changeset [396] by bturner
for ant (run within the module) and for maven the files need to be located …
21:12 Changeset [395] by bturner
using maven seems to instantiate the server differently than with ant -- …
21:11 Changeset [394] by bturner
add new (maven) modules: rdb and server
21:10 Changeset [393] by bturner
add new (maven) modules: rdb and server
21:10 Changeset [392] by bturner
add new (maven) modules: rdb and server
20:57 Ticket #67 (Make Organism enum extensible) created by thomas
Make it possible to extend the organism enum (and read it from …
20:43 Changeset [391] by rodche
Previously missing text file added; Also - generated classes and other …

06/01/10:

15:46 Ticket #66 (Entrez IDMapper) created by martijn
Entrez Provides a webservice that can also do identifier mapping. There …
15:38 Changeset [390] by bturner
test
15:37 Changeset [389] by bturner
test
13:08 Ticket #65 (ChEBI identifier has wrong structure) created by thomas
The ChEBI identifiers in the bridgedb database are currently a number …
07:03 Changeset [388] by AlexanderPico
06:07 Changeset [387] by AlexanderPico
Adding KEGG Genes and BioCyc? datasources

05/31/10:

23:27 Changeset [386] by AlexanderPico
23:24 Changeset [385] by AlexanderPico
23:22 Changeset [384] by AlexanderPico
23:22 Changeset [383] by AlexanderPico
23:20 Changeset [382] by AlexanderPico
23:20 Changeset [381] by AlexanderPico
23:19 Changeset [380] by AlexanderPico
23:19 Changeset [379] by AlexanderPico
22:44 Changeset [378] by AlexanderPico
adding Mtuberculosis
07:26 Changeset [377] by AlexanderPico
updating to work on plato cluster
07:25 Changeset [376] by AlexanderPico
setting to older Derby bin; commenting out debug line
05:46 Changeset [375] by AlexanderPico
fixing export syntax
05:37 Changeset [374] by AlexanderPico
switching back to export from setenv…
03:28 Ticket #64 (compare size and performance benefits of using integers in place of ...) created by AlexanderPico
Will replace ensembl ids in Link table with integers to see if there are …
03:20 Ticket #63 (parse synonyms to separate attr entries) closed by AlexanderPico
fixed
03:20 Ticket #63 (parse synonyms to separate attr entries) created by AlexanderPico
For a given gene, multiple synonyms should be stored in Attr table as …
03:02 Ticket #62 (new datasource: gene wiki) closed by AlexanderPico
fixed
03:01 Ticket #54 (Incorrect case for Zea mays) closed by AlexanderPico
fixed
03:01 Changeset [373] by AlexanderPico
added Zea mays, fixed typos and whitespace issues, fix #54
02:57 Changeset [372] by AlexanderPico
corrected case error on Zea Mays; fix #54
02:42 Changeset [371] by AlexanderPico
removed debug statements
02:35 Changeset [370] by AlexanderPico
modified handling of species aliases for latest API
01:52 Changeset [369] by AlexanderPico
updated to work on plato cluster
01:52 Changeset [368] by AlexanderPico
updated to work on plato cluster

05/30/10:

02:42 Changeset [367] by AlexanderPico
Added Gene Wiki as a datasource

05/29/10:

23:46 Changeset [366] by AlexanderPico
fixed table import for plato
23:38 Changeset [365] by AlexanderPico
Added HGNC symbol as primary id
23:27 Changeset [364] by AlexanderPico
Added Gene Wiki support

05/26/10:

23:54 Ticket #62 (new datasource: gene wiki) created by AlexanderPico
I propose creating a new datasource in our next round of databases that …
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