Timeline


and .

03/01/10:

21:01 Ticket #53 (BridgeRest.getContents) created by jgao
Add a new function in BridgeRest? to get the list of organisms/databases: …

02/27/10:

20:49 Ticket #7 (Update metabolite database from hmdb, use schema v3) closed by martijn
fixed
20:48 Changeset [322] by martijn
Added contents page, to get a list of available organisms. Fixes #37
20:47 Ticket #37 (Add a method to list available mappers) closed by martijn
fixed
20:18 Changeset [321] by martijn
New HMDB maker and Quality Control script
20:02 Changeset [320] by martijn
Tweaked rdb.construct package for coming HMDB update
20:02 Changeset [319] by martijn
Integrated o.b.rdb.construct in global build

02/25/10:

20:57 Changeset [318] by martijn
Made SimpleGdb? thread-safe. Instantiate with con- nection string instead …
20:57 Changeset [317] by martijn
Refactoring dead code: Removed all methods pertaining to constructing …
20:57 Changeset [316] by martijn
refactor LazyPst? to also handle resultset and connection

02/24/10:

15:41 Changeset [315] by martijn
Accidentally checked in old version of GdbProvider?, reverted. Adjusted …
14:32 Changeset [314] by thomas
added script to copy derby database to mysql

02/23/10:

20:27 Changeset [313] by martijn
Various fixes to buildsystem
16:47 Changeset [312] by martijn
update cronos to jar reorg
16:26 Changeset [311] by martijn
Check axis code in, to be able to build offline
16:19 Changeset [310] by martijn
Removed empty directories
16:15 Changeset [309] by martijn
Removed empty direcotory
16:04 Ticket #45 (Split bridgedb.jar) closed by martijn
fixed
15:28 Changeset [308] by martijn
Big project Reogranization: - all modules are named with their main …

02/19/10:

07:39 Ticket #52 (UnsupportedOperationException in IDMapperStack.freeAttributeSearch()) closed by jgao
fixed
06:56 Changeset [307] by jgao
Add isFreeAttributeSearchSupported() to AttributeMapper?

02/18/10:

20:23 HowToCite edited by martijn
(diff)
20:23 HowToCite edited by martijn
(diff)
20:18 Changeset [306] by martijn
Replaced spaces with tab in datasources.txt

02/17/10:

23:54 Changeset [305] by AlexanderPico
added EnZm? for Maize
23:25 Changeset [304] by AlexanderPico
modified linkout to gramene for EnAt?
20:55 Ticket #28 (Integrate AttributeMapper) closed by jgao
fixed
20:43 Ticket #11 (data type guessing in CyThesaurus) closed by AlexanderPico
fixed
20:43 Ticket #15 (Automatic install and update of Derby databases) closed by martijn
duplicate: duplicate of #17
20:40 Ticket #25 (R example for embedded REST webservice) closed by martijn
fixed
20:38 Ticket #29 (Integrate bridgedb web service) closed by AlexanderPico
fixed
20:29 Ticket #38 (Allow BridgeRest server config to specify any idmapper, not just ...) closed by martijn
fixed

02/15/10:

20:41 Changeset [303] by AlexanderPico
adding datasource for WikiGene? (already in databases and causing "null" in …
20:39 Changeset [302] by AlexanderPico
removing temp fixes from repo
17:52 Ticket #52 (UnsupportedOperationException in IDMapperStack.freeAttributeSearch()) created by jgao
Bridge-rdb and bridge-rest AttributeMappers? support free search, but …

02/13/10:

02:52 Changeset [301] by AlexanderPico
modified to distinguish derby productions from web service
02:41 Changeset [300] by AlexanderPico
added DataSources? for WikiGene?, GOSlim, and Symbols

02/09/10:

21:41 Ticket #51 (Monitor webservice.bridgedb.org) created by martijn
Set up active monitoring of webservice.bridgedb.org. Also include speed …

02/07/10:

05:04 Changeset [299] by jgao
BioMart?: do not print the url when retrieve attributes for a dataset.
02:14 BridgeWebservice edited by AlexanderPico
(diff)

02/05/10:

22:24 Changeset [298] by jgao
BridgeRest?: cache supportedSrc/TgtDataSources and attributeSet; support …
20:59 HowToCite edited by AlexanderPico
(diff)
17:32 Ticket #50 (IDMapper for WikiPathways webservice) created by martijn
The immediate use case of this would be: looking up the "Symbol" of a …

02/04/10:

19:54 Ticket #49 (MySQL connection pooling for webservice) created by martijn
It's possible that MySQL connection pooling leads to a significant …

02/02/10:

22:10 Ticket #48 (Add WP to databases) created by AlexanderPico
By adding WikiPathways? to BridgeDb? we open up mapping options to bridgedb …
15:27 HowToCite edited by martijn
(diff)
15:24 HowToCite edited by martijn
(diff)
15:24 HowToCite created by martijn
15:23 WikiStart edited by martijn
(diff)
15:22 PresentationMaterial edited by martijn
(diff)
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