Timeline


and .

08/24/09:

17:47 Ticket #16 (Wrap up ID mapping services) created by jgao
Wrap up id mapping services in CyThesaurus? in a separate jar.
09:44 Ticket #15 (Automatic install and update of Derby databases) created by martijn
Automatic install and update of Derby databases This would entail * …
09:29 Ticket #14 (ID mapping data validation) created by martijn
09:29 Ticket #13 (Cache DB in CyThesaurus) created by martijn
09:26 Ticket #12 (Port CyThesaurus to Cytoscape 3) created by martijn
Port CyThesaurus? to Cytoscape 3.

08/22/09:

20:23 Changeset [168] by martijn
Work on transitive mapping in Stack Also added unit test and data file Not …
20:23 Changeset [167] by martijn
Fixed NPE in IDMapperFile Also added unit test for this problem

08/19/09:

17:47 Changeset [166] by jgao
checkstyle fix
13:55 Changeset [165] by martijn
Fix for classpath problems in picr
13:33 Changeset [164] by martijn
Javadoc, style issues in corelib and bio
13:33 Changeset [163] by martijn
Started implementation of transitive stack Unfinished methods will return …
09:44 Changeset [162] by martijn
Fixes spurious DataSource? entries. There was a problem where each call go …
05:53 Changeset [161] by jgao
IDMapperBiomart refactor to clean the interface

08/17/09:

21:52 Ticket #11 (data type guessing in CyThesaurus) created by jgao
after MIRIAM regular expression is supported in bridgedb
21:50 Ticket #10 (MIRIAM data source support) created by jgao
* converting data sources from bridgedb, biomart, picr, synergizer into …
20:38 Ticket #9 (Implement transitivity in IDMapperStack) created by martijn
20:37 Ticket #8 (Let NetworkMerge plugin make use of BridgeDb) created by martijn
NetworkMerge? is not yet making use of BridgeDb?. Start making use of it.
20:28 WikiStart edited by martijn
(diff)
14:25 Changeset [160] by martijn
Php example by Andra Waagmeester
14:11 ComparisonMatrix edited by martijn
(diff)
14:05 WikiStart edited by martijn
(diff)
14:04 WikiStart edited by martijn
(diff)
14:03 DevelopersTeam edited by martijn
(diff)
14:02 DownloadBridgeDb edited by martijn
(diff)
14:02 DownloadBridgeDb edited by martijn
(diff)
14:02 ApiOverview edited by martijn
(diff)
12:59 Changeset [159] by martijn
Some new datasources supported by Miriam

08/16/09:

20:38 WikiStart edited by jgao
CyThesaurus? link (diff)
05:51 Changeset [158] by jgao
IDMapperSynergizer

08/15/09:

09:16 Changeset [157] by jgao
boolean isMappingSupported(src, tgt) in IDMapperCapabilities

08/14/09:

21:50 Changeset [156] by jgao
IDMapperText & IDMapperBiomart driver update, IDMapperBiomart constructor …
10:07 ComparisonMatrix edited by martijn
(diff)
10:07 ComparisonMatrix edited by martijn
(diff)

08/12/09:

07:56 Changeset [155] by jgao
IDMapperPicrBiomart, IDMapperFile bug fix for tgtDataSources=null
07:51 Changeset [154] by jgao
IDMapperPicrRest

08/11/09:

22:58 Changeset [153] by jgao
Javadoc fix
22:12 Changeset [152] by martijn
build file for picr
11:41 Changeset [151] by martijn
Updated metrics script

08/10/09:

11:02 Changeset [150] by thomas
added web service example in R

08/09/09:

05:23 Changeset [149] by jgao
Checkstype fix

08/07/09:

17:35 Changeset [148] by jgao
Picr onlyActive getter setter
12:16 Changeset [147] by martijn
Added Driver for connecting to remote derby server
10:57 Changeset [146] by martijn
WIP on improving biomart webservice
09:00 ComparisonMatrix edited by martijn
(diff)

08/05/09:

07:57 Changeset [145] by martijn
Updated scripts to new file locations
07:08 Changeset [144] by martijn
updated file references in tgz target

08/04/09:

19:21 Changeset [143] by martijn
Further tweak of api docs
19:14 Changeset [142] by martijn
Tweak on doc target
18:44 Changeset [141] by martijn
Forgotten start-server script
18:44 Changeset [140] by martijn
Clean up of build files and root dir
18:44 Changeset [139] by martijn
All new libraries are created in dist, not lib
15:52 LocalService edited by martijn
(diff)
15:51 LocalService edited by martijn
(diff)
15:51 LocalService edited by martijn
(diff)
15:50 LocalService edited by martijn
(diff)
15:50 LocalService edited by martijn
(diff)
15:50 LocalService edited by martijn
(diff)
15:49 LocalService edited by martijn
(diff)
15:46 LocalService edited by martijn
(diff)
15:42 LocalService edited by martijn
(diff)
15:42 Changeset [138] by martijn
Examples and packaging for running bridgedb as service
15:41 LocalService created by martijn
15:36 WikiStart edited by martijn
(diff)
15:36 WikiStart edited by martijn
(diff)
14:38 Ticket #7 (Update metabolite database from hmdb, use schema v3) created by martijn
Last update was in 2008. Please update the metabolite database

08/03/09:

16:33 Changeset [137] by martijn
Implemented IDMapper.getCapabilities().getProperty() for IDMapperRdb.
16:09 Changeset [136] by martijn
Fixed some checkstyle problems
13:01 Changeset [135] by martijn
Added getSpeciesSpecificEnsembl and getURN. * Added method to get species …
03:42 Changeset [134] by jgao
Javadoc improvement, Checkstyle fix

07/28/09:

14:31 Changeset [133] by martijn
Forgotten file for schema v3
14:22 Changeset [132] by martijn
Made PICR extend webservice
14:11 Changeset [131] by martijn
Simplified test for backpage-based attributes
14:06 Changeset [130] by martijn
Support for changes to backpage column in s3
14:06 Changeset [129] by martijn
WIP

07/25/09:

11:30 Changeset [128] by AlexanderPico
typos
11:17 Changeset [127] by AlexanderPico
tweaks
11:08 Changeset [126] by AlexanderPico
updated unigene codes
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