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#10
|
MIRIAM data source support
|
Core library
|
|
|
|
martijn
|
new
|
08/17/09
|
|
#12
|
Port CyThesaurus to Cytoscape 3
|
CyThesaurus
|
|
|
|
jgao
|
new
|
08/24/09
|
|
#13
|
Cache DB in CyThesaurus
|
CyThesaurus
|
|
|
|
jgao
|
new
|
08/24/09
|
|
#14
|
ID mapping data validation
|
CyThesaurus
|
|
|
|
jgao
|
new
|
08/24/09
|
|
#17
|
Downloader for derby databases
|
Core library
|
|
|
|
AlexanderPico
|
new
|
08/27/09
|
|
#20
|
Consider adding iterator method to IDMapper
|
Core library
|
|
|
|
martijn
|
new
|
08/27/09
|
|
#22
|
LinkOut in Cytoscape
|
CyThesaurus
|
|
|
|
jgao
|
new
|
09/02/09
|
|
#33
|
integrate AliasServer
|
Core library
|
|
|
|
martijn
|
new
|
11/05/09
|
|
#34
|
integarte caBIG geneConnect
|
Core library
|
|
|
|
martijn
|
new
|
11/05/09
|
|
#35
|
integrate HMS/IDCS
|
Core library
|
|
|
|
martijn
|
new
|
11/05/09
|
|
#36
|
mapID of multiple refs using HTTP POST
|
REST Webservice
|
|
|
|
AlexanderPico
|
new
|
11/06/09
|
|
#40
|
Batchmapper: better error when system code is missing
|
batchmapper
|
|
|
|
martijn
|
new
|
01/14/10
|
|
#41
|
Batchmapper: indicate ambiguity in output file.
|
batchmapper
|
|
|
|
martijn
|
new
|
01/19/10
|
|
#42
|
return multiple mappings
|
batchmapper
|
|
|
|
martijn
|
new
|
01/19/10
|
|
#43
|
DataSource hierarchy
|
Core library
|
|
|
|
martijn
|
new
|
01/22/10
|
|
#44
|
Better BridgeWebservice Load Management
|
REST Webservice
|
|
|
|
AlexanderPico
|
new
|
01/22/10
|
|
#49
|
MySQL connection pooling for webservice
|
REST Webservice
|
|
|
|
AlexanderPico
|
new
|
02/04/10
|
|
#50
|
IDMapper for WikiPathways webservice
|
Core library
|
|
|
|
martijn
|
new
|
02/05/10
|
|
#51
|
Monitor webservice.bridgedb.org
|
REST Webservice
|
|
|
|
martijn
|
new
|
02/09/10
|
|
#53
|
BridgeRest.getContents
|
Core library
|
|
|
|
martijn
|
new
|
03/01/10
|
|
#55
|
get taxonomyID for Organism
|
Core library
|
|
|
|
martijn
|
new
|
03/25/10
|
|
#56
|
Use MiriamLink to fetch datasource information from Miriam
|
Core library
|
|
|
|
martijn
|
new
|
03/25/10
|
|
#57
|
Implement a "org.bridgedb.webservice.uniprot"
|
Core library
|
|
|
|
martijn
|
new
|
03/26/10
|
|
#58
|
proposal for BridgeDerby versioning & automatic updates
|
Core library
|
|
|
|
martijn
|
new
|
03/26/10
|
|
#59
|
Performance optimization: Derby vs. MySQL
|
REST Webservice
|
|
|
|
AlexanderPico
|
new
|
04/21/10
|
|
#60
|
IDMapper for Agilent annotation files
|
Core library
|
|
|
|
martijn
|
new
|
04/25/10
|
|
#61
|
URLEncoder exception in bridgedb-vanted
|
Core library
|
|
|
|
martijn
|
new
|
05/12/10
|
|
#64
|
compare size and performance benefits of using integers in place of ensembl ids
|
Derby ensembl
|
|
|
|
AlexanderPico
|
new
|
05/31/10
|
|
#65
|
ChEBI identifier has wrong structure
|
Core library
|
|
|
|
martijn
|
new
|
06/01/10
|
|
#66
|
Entrez IDMapper
|
Core library
|
|
|
|
martijn
|
new
|
06/01/10
|
|
#67
|
Make Organism enum extensible
|
Core library
|
|
|
|
martijn
|
new
|
06/02/10
|
|
#68
|
error in org.bridgedb.webservice.synergizer.Tests
|
Core library
|
|
|
|
martijn
|
new
|
06/04/10
|
|
#69
|
IDMapper for mirbase, to map between mature<->immature miRNA
|
Core library
|
|
|
|
martijn
|
new
|
06/09/10
|
|
#71
|
Switch back to single Ensembl systemcode
|
Core library
|
|
|
|
martijn
|
new
|
12/22/10
|
|
#72
|
check use of Hac and H for HGNC IDs and symbols
|
Derby ensembl
|
|
|
|
AlexanderPico
|
new
|
02/01/11
|
|
#73
|
Transitivity for IDMapperStack
|
Core library
|
|
|
|
martijn
|
new
|
06/16/11
|
|
#74
|
No mapping from SGD identifiers in yeast databases.
|
Derby ensembl
|
|
|
|
AlexanderPico
|
new
|
06/29/11
|
|
#75
|
switch info table to 2-column key/value pairs
|
Core library
|
|
|
|
martijn
|
new
|
12/03/11
|