|
#10
|
MIRIAM data source support
|
Core library
|
new
|
|
|
|
|
martijn
|
08/17/09
|
|
#12
|
Port CyThesaurus to Cytoscape 3
|
CyThesaurus
|
new
|
|
|
|
|
jgao
|
08/24/09
|
|
#13
|
Cache DB in CyThesaurus
|
CyThesaurus
|
new
|
|
|
|
|
jgao
|
08/24/09
|
|
#14
|
ID mapping data validation
|
CyThesaurus
|
new
|
|
|
|
|
jgao
|
08/24/09
|
|
#17
|
Downloader for derby databases
|
Core library
|
new
|
|
|
|
|
AlexanderPico
|
08/27/09
|
|
#20
|
Consider adding iterator method to IDMapper
|
Core library
|
new
|
|
|
|
|
martijn
|
08/27/09
|
|
#22
|
LinkOut in Cytoscape
|
CyThesaurus
|
new
|
|
|
|
|
jgao
|
09/02/09
|
|
#33
|
integrate AliasServer
|
Core library
|
new
|
|
|
|
|
martijn
|
11/05/09
|
|
#34
|
integarte caBIG geneConnect
|
Core library
|
new
|
|
|
|
|
martijn
|
11/05/09
|
|
#35
|
integrate HMS/IDCS
|
Core library
|
new
|
|
|
|
|
martijn
|
11/05/09
|
|
#36
|
mapID of multiple refs using HTTP POST
|
REST Webservice
|
new
|
|
|
|
|
AlexanderPico
|
11/06/09
|
|
#40
|
Batchmapper: better error when system code is missing
|
batchmapper
|
new
|
|
|
|
|
martijn
|
02/17/10
|
|
#41
|
Batchmapper: indicate ambiguity in output file.
|
batchmapper
|
new
|
|
|
|
|
martijn
|
01/19/10
|
|
#42
|
return multiple mappings
|
batchmapper
|
new
|
|
|
|
|
martijn
|
02/17/10
|
|
#44
|
Better BridgeWebservice Load Management
|
REST Webservice
|
new
|
|
|
|
|
AlexanderPico
|
01/22/10
|
|
#49
|
MySQL connection pooling for webservice
|
REST Webservice
|
new
|
|
|
|
|
AlexanderPico
|
02/04/10
|
|
#50
|
IDMapper for WikiPathways webservice
|
Core library
|
new
|
|
|
|
|
martijn
|
02/05/10
|
|
#51
|
Monitor webservice.bridgedb.org
|
REST Webservice
|
new
|
|
|
|
|
martijn
|
02/09/10
|
|
#53
|
BridgeRest.getContents
|
Core library
|
new
|
|
|
|
|
martijn
|
03/01/10
|
|
#57
|
Implement a "org.bridgedb.webservice.uniprot"
|
Core library
|
new
|
|
|
|
|
martijn
|
03/26/10
|
|
#58
|
proposal for BridgeDerby versioning & automatic updates
|
Core library
|
new
|
|
|
|
|
martijn
|
03/26/10
|
|
#59
|
Performance optimization: Derby vs. MySQL
|
REST Webservice
|
new
|
|
|
|
|
AlexanderPico
|
04/21/10
|
|
#60
|
IDMapper for Agilent annotation files
|
Core library
|
new
|
|
|
|
|
martijn
|
04/25/10
|
|
#61
|
URLEncoder exception in bridgedb-vanted
|
Core library
|
new
|
|
|
|
|
martijn
|
05/12/10
|
|
#64
|
compare size and performance benefits of using integers in place of ensembl ids
|
Derby ensembl
|
new
|
|
|
|
|
AlexanderPico
|
05/31/10
|
|
#65
|
ChEBI identifier has wrong structure
|
Core library
|
new
|
|
|
|
|
martijn
|
06/01/10
|
|
#66
|
Entrez IDMapper
|
Core library
|
new
|
|
|
|
|
martijn
|
06/01/10
|
|
#67
|
Make Organism enum extensible
|
Core library
|
new
|
|
|
|
|
martijn
|
06/02/10
|
|
#68
|
error in org.bridgedb.webservice.synergizer.Tests
|
Core library
|
new
|
|
|
|
|
martijn
|
06/04/10
|
|
#69
|
IDMapper for mirbase, to map between mature<->immature miRNA
|
Core library
|
new
|
|
|
|
|
martijn
|
06/09/10
|
|
#63
|
parse synonyms to separate attr entries
|
Derby ensembl
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
05/31/10
|
|
#62
|
new datasource: gene wiki
|
Derby ensembl
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
05/31/10
|
|
#54
|
Incorrect case for Zea mays
|
Derby ensembl
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
05/31/10
|
|
#47
|
integrate cronos
|
CyThesaurus
|
closed
|
fixed
|
|
|
|
jgao
|
03/15/10
|
|
#28
|
Integrate AttributeMapper
|
CyThesaurus
|
closed
|
fixed
|
|
|
|
jgao
|
02/17/10
|
|
#11
|
data type guessing in CyThesaurus
|
CyThesaurus
|
closed
|
fixed
|
|
|
|
jgao
|
02/17/10
|
|
#15
|
Automatic install and update of Derby databases
|
Core library
|
closed
|
duplicate
|
|
|
|
martijn
|
02/17/10
|
|
#25
|
R example for embedded REST webservice
|
REST Webservice
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
02/17/10
|
|
#29
|
Integrate bridgedb web service
|
CyThesaurus
|
closed
|
fixed
|
|
|
|
jgao
|
02/17/10
|
|
#38
|
Allow BridgeRest server config to specify any idmapper, not just idmapper-pgdb
|
REST Webservice
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
02/17/10
|
|
#27
|
support .bridge
|
CyThesaurus
|
closed
|
fixed
|
|
|
|
jgao
|
01/26/10
|
|
#39
|
Wrong nugowiki linkout
|
Core library
|
closed
|
fixed
|
|
|
|
martijn
|
11/13/09
|
|
#31
|
Error code / redirect page when going to wrong url
|
REST Webservice
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
11/05/09
|
|
#32
|
Add helpful error message for "no mappers" case
|
REST Webservice
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
11/05/09
|
|
#26
|
REST webservice should run on port 80
|
REST Webservice
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
11/05/09
|
|
#23
|
REST webservice documentation is out of date
|
REST Webservice
|
closed
|
fixed
|
|
|
|
AlexanderPico
|
11/05/09
|
|
#16
|
Wrap up ID mapping services
|
CyThesaurus
|
closed
|
fixed
|
|
|
|
jgao
|
09/02/09
|