These identifier mapping databases contain mappings for metabolites extracted from HMDB.
- Webpage: https://github.com/egonw/create-bridgedb-hmdb/blob/master/README.md
- Author: Egon Willighagen (orcid:0000-0001-7542-0286)
- License: CCZero
- Source code: https://github.com/egonw/create-bridgedb-hmdb
- Issues: https://github.com/egonw/create-bridgedb-hmdb/issues
Releases
- 2017-06-21: metabolites_20170621.bridge (QC report)
- mapping sources: HMDB 3.6, ChEBI 152, Wikidata (2017-06-21)
- please cite using 10.6084/m9.figshare.5135035.v1
- 2016-10-12: metabolites_20161012.bridge.gz (QC report)
- mapping sources: HMDB 3.6, ChEBI 144, Wikidata (2016-10-12)
- About 80% more mappings, thanks to the work by Sebastian Burgstaller
- please cite using 10.6084/m9.figshare.4010787.v1
- 2016-09-10: metabolites_20160910.bridge.gz (QC report)
- mapping sources: HMDB 3.6, ChEBI 142, Wikidata (2016-09-07)
- now includes metabolites names from ChEBI
- please cite using 10.6084/m9.figshare.3817386.v1
- 2016-06-05: metabolites_20160605.bridge.zip (QC report)
- mapping sources: HMDB 3.6, ChEBI 140, Wikidata (2016-06-04)
- now includes metabolites names from Wikidata
- adds numeric ChEBI IDs from the ChEBI source
- please cite using 10.6084/m9.figshare.3413668.v1
- 2016-04-17: metabolites_20160412.bridge.zip (QC report)
- mapping sources: HMDB 3.6, ChEBI 138, Wikidata (2016-04-11)
- please cite using 10.6084/m9.figshare.3169147.v1
- 2016-01-17: metabolites_20160113.bridge.gz (QC report)
- mapping sources: HMDB 3.6, ChEBI 135, Wikidata (2016-01-13)
- adds LIPID Maps and KNApSAcK as data sources with mappings
- please cite using 10.6084/m9.figshare.3083842.v1
- 2015-07-17: metabolites_20150717.bridge.gz (QC report)
- mapping sources: HMDB 3.6, ChEBI 125, Wikidata
- adds InChIKey, Wikidata, KEGG Drug as data sources with mappings
- more mappings for PubChem and Chemspider
- please cite using 10.6084/m9.figshare.1487696.v2
- 2014-05-16: metabolites_20140516.bridge.zip (QC report)
- mapping sources: HMDB 3.5, ChEBI