root/trunk/org.bridgedb.bio

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Rev Chgset Date Author Log Message
(edit) @591 [591] 3 months AlexanderPico added black mold
(edit) @590 [590] 3 months AlexanderPico added Cthe
(edit) @588 [588] 3 months AlexanderPico added Cthe
(edit) @585 [585] 3 months martijn Added unit tests showing errors in the CAS registry number detection
(edit) @584 [584] 3 months martijn Fixed the regexp pattern for CAS registry numbers
(edit) @581 [581] 3 months martijn Identifer -> Identifier
(edit) @577 [577] 3 months martijn Update PubChem? names to be compatibile with MIRIAM
(edit) @573 [573] 3 months martijn META-INF files for all modules
(edit) @568 [568] 4 months martijn Small typo fix
(edit) @561 [561] 5 months martijn Fixed mismatch between datasources.txt and BioDataSources?
(edit) @560 [560] 5 months martijn Updated DataSources?. Added Mirbase mature constant
(edit) @558 [558] 5 months martijn Fixed some .classpath files
(edit) @549 [549] 6 months martijn Deprecated pubchem, created pubchem compound and pubchem substance
(edit) @545 [545] 8 months rodche The project version used by maven2 POMs is now 1.1.1-SNAPSHOT (the next …
(edit) @544 [544] 8 months rodche Changed to version 1.1.0 in all POMs
(edit) @543 [543] 8 months AlexanderPico updated gene wiki linkout
(edit) @527 [527] 11 months AlexanderPico added and ordered
(edit) @523 [523] 11 months martijn Update version no in bnd files
(edit) @521 [521] 11 months martijn Use bnd to generate OSGi headers. Merge common build file bits in …
(edit) @520 [520] 12 months AlexanderPico updated affy query url
(edit) @514 [514] 13 months martijn Include datasources xml file in jar
(edit) @513 [513] 13 months martijn Improvements to server config file: allow comments, allow specification of …
(edit) @512 [512] 13 months AlexanderPico fixed spacing around common names
(edit) @510 [510] 14 months martijn Add support for converting MIRIAM URN to Xref
(edit) @509 [509] 14 months martijn Start defining aliases, using a new xml configuration format
(edit) @478 [478] 16 months martijn Systemcode for reactome
(edit) @475 [475] 16 months martijn Synced datasources.txt with MIRIAM resources
(edit) @472 [472] 17 months AlexanderPico noted Tb as species-specific
(edit) @471 [471] 17 months AlexanderPico fixed pattern
(edit) @470 [470] 17 months AlexanderPico added Tb and pattern
(edit) @461 [461] 18 months AlexanderPico added pattern match for yeast orfs used by Ensembl
(edit) @460 [460] 18 months martijn separate HGNC identifier and HGNC Symbol
(edit) @458 [458] 18 months thomas fixed HGNC url pattern
(edit) @457 [457] 18 months thomas replaced space with tab in datasources.txt
(edit) @456 [456] 18 months thomas - added WikiGenes? to datasources.txt - fixed wrong names for Gene Wiki and …
(edit) @448 [448] 20 months martijn Added BioDataSource? constant for WikiPathways?
(edit) @447 [447] 20 months martijn Fix junit tests, update some to junit4
(edit) @446 [446] 20 months martijn Fix missing organism column in datasources, updated to latest MIRIAM
(edit) @445 [445] 20 months martijn Added constant for Sus scrofa (pig)
(edit) @444 [444] 20 months martijn Updated .classpath entries to switch to junit4
(edit) @443 [443] 20 months AlexanderPico fixed tab format for Mx
(edit) @439 [439] 21 months AlexanderPico added TubercuList?
(edit) @434 [434] 22 months rodche Test re-factored using Junit4 annotations (two tests still fail, which I …
(edit) @426 [426] 22 months martijn Synced datasources.txt with MIRIAM
(edit) @425 [425] 22 months martijn Change to eclipse classpath
(edit) @424 [424] 22 months martijn Make WikiPahtways? primary
(edit) @422 [422] 23 months thomas added pig to datasources.txt
(edit) @421 [421] 23 months AlexanderPico fixing whitespace
(edit) @420 [420] 23 months AlexanderPico adding gene wiki to *other* datasources.txt!
(edit) @401 [401] 2 years rodche only ToDo? updated (was a mistake)
(edit) @398 [398] 2 years AlexanderPico updating HUGO
(edit) @391 [391] 2 years rodche Previously missing text file added; Also - generated classes and other …
(edit) @387 [387] 2 years AlexanderPico Adding KEGG Genes and BioCyc? datasources
(edit) @378 [378] 2 years AlexanderPico adding Mtuberculosis
(edit) @373 [373] 2 years AlexanderPico added Zea mays, fixed typos and whitespace issues, fix #54
(edit) @367 [367] 2 years AlexanderPico Added Gene Wiki as a datasource
(edit) @363 [363] 2 years rodche "Mavenized" are 6 modules: org.bridgedb, org.bridgedb.bio, …
(edit) @344 [344] 2 years martijn Fixed project names
(edit) @343 [343] 2 years martijn Checking in eclipse project and classpath files, a little experiment
(edit) @325 [325] 2 years martijn Fix classpath in jUnit testing
(add) @308 [308] 2 years martijn Big project Reogranization: - all modules are named with their main …
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