root/trunk/dbbuilder

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Rev Chgset Date Author Log Message
(edit) @592 [592] 3 months AlexanderPico fixed naming of bacteria
(edit) @589 [589] 3 months AlexanderPico added cthe
(edit) @572 [572] 3 months AlexanderPico changed to gdb.config
(edit) @571 [571] 3 months AlexanderPico now it also generates bridge.config
(edit) @557 [557] 5 months AlexanderPico fixed typo
(edit) @556 [556] 6 months AlexanderPico added Series to Info table
(edit) @555 [555] 6 months AlexanderPico added Series to Info table
(edit) @552 [552] 6 months martijn Improved HDMB script: InChI keys and info properties
(edit) @550 [550] 6 months martijn Adjusted dbbuilder to new pathvisio
(edit) @548 [548] 6 months AlexanderPico switched from $EnSpeciesCode? to En
(edit) @547 [547] 6 months AlexanderPico switched from EnXXXXXX to En
(edit) @546 [546] 6 months AlexanderPico updated GO namespace as Symbol
(edit) @541 [541] 9 months thomas added script to extract bioconductor annotations to bridgedb IDMapperText …
(edit) @540 [540] 11 months AlexanderPico upped limit on start
(edit) @539 [539] 11 months AlexanderPico added yeast arrays
(edit) @538 [538] 11 months AlexanderPico additional tweaks to GO handling
(edit) @537 [537] 11 months AlexanderPico changed "Term" to "Description" for better bridgedb support
(edit) @536 [536] 11 months AlexanderPico fixed write to qc file
(edit) @535 [535] 11 months AlexanderPico removing goslim from derby, for now
(edit) @534 [534] 11 months AlexanderPico changed default for STD to "no"
(edit) @533 [533] 11 months AlexanderPico major overhaul to how array id are collected; other minor improvements, …
(edit) @532 [532] 11 months AlexanderPico new system for handling array id
(edit) @531 [531] 11 months AlexanderPico new system for handling array id
(edit) @530 [530] 11 months AlexanderPico updated gz of sql.dump
(edit) @529 [529] 11 months AlexanderPico updated qc call
(edit) @528 [528] 11 months AlexanderPico updated qc call
(edit) @526 [526] 11 months AlexanderPico added black mold
(edit) @525 [525] 11 months AlexanderPico consolidated genomes download script
(edit) @524 [524] 11 months AlexanderPico consolidated genomes download script
(edit) @518 [518] 12 months AlexanderPico giving goslim-bp unique code
(edit) @517 [517] 12 months AlexanderPico adapted to collect probes and probesets, skipping problematic …
(edit) @469 [469] 17 months AlexanderPico added final compression line for distribution
(edit) @468 [468] 17 months AlexanderPico updating SGD_GENE collection for new Ensembl convention
(edit) @467 [467] 17 months AlexanderPico adapted to handle mixed conventions and optional funcgen
(edit) @466 [466] 17 months AlexanderPico added Name to Affy
(edit) @465 [465] 17 months AlexanderPico added qc testing of derby
(edit) @464 [464] 17 months AlexanderPico added qc testing of derby
(edit) @463 [463] 17 months AlexanderPico added parameters for greater extraction control and qc testing of derby
(edit) @462 [462] 17 months AlexanderPico added parameters for greater extraction control and qc testing of derby
(edit) @455 [455] 19 months AlexanderPico added funcgen and genus_species flags
(edit) @454 [454] 19 months AlexanderPico customization for funcgen and plant oddities
(edit) @453 [453] 19 months AlexanderPico updated list
(edit) @452 [452] 19 months AlexanderPico updated path convention
(edit) @451 [451] 19 months AlexanderPico updated path convention
(edit) @450 [450] 19 months AlexanderPico updated path convention
(edit) @442 [442] 20 months AlexanderPico note to update SpeciesList? with organisms.txt
(edit) @440 [440] 21 months AlexanderPico added Tb
(edit) @438 [438] 21 months AlexanderPico added TubercuList?
(edit) @437 [437] 21 months AlexanderPico update rice
(edit) @436 [436] 21 months AlexanderPico added KEGG and BioCyc?; updated HGNC; tweaked GeneWiki?
(edit) @419 [419] 2 years AlexanderPico updating unique Sc handling
(edit) @418 [418] 2 years AlexanderPico added Kg and Bc to build step
(edit) @417 [417] 2 years AlexanderPico added gene wiki to build step
(edit) @416 [416] 2 years AlexanderPico modified categorization
(edit) @415 [415] 2 years AlexanderPico
(edit) @414 [414] 2 years AlexanderPico added funcgen dl
(edit) @413 [413] 2 years AlexanderPico added release variable
(edit) @403 [403] 2 years martijn Quality Control tool for checking quality of new BridgeDerby builds. Put …
(edit) @399 [399] 2 years AlexanderPico
(edit) @388 [388] 2 years AlexanderPico
(edit) @386 [386] 2 years AlexanderPico
(edit) @385 [385] 2 years AlexanderPico
(edit) @384 [384] 2 years AlexanderPico
(edit) @383 [383] 2 years AlexanderPico
(edit) @382 [382] 2 years AlexanderPico
(edit) @381 [381] 2 years AlexanderPico
(edit) @380 [380] 2 years AlexanderPico
(edit) @379 [379] 2 years AlexanderPico
(edit) @377 [377] 2 years AlexanderPico updating to work on plato cluster
(edit) @376 [376] 2 years AlexanderPico setting to older Derby bin; commenting out debug line
(edit) @375 [375] 2 years AlexanderPico fixing export syntax
(edit) @374 [374] 2 years AlexanderPico switching back to export from setenv…
(edit) @372 [372] 2 years AlexanderPico corrected case error on Zea Mays; fix #54
(edit) @371 [371] 2 years AlexanderPico removed debug statements
(edit) @370 [370] 2 years AlexanderPico modified handling of species aliases for latest API
(edit) @369 [369] 2 years AlexanderPico updated to work on plato cluster
(edit) @368 [368] 2 years AlexanderPico updated to work on plato cluster
(edit) @366 [366] 2 years AlexanderPico fixed table import for plato
(edit) @365 [365] 2 years AlexanderPico Added HGNC symbol as primary id
(edit) @364 [364] 2 years AlexanderPico Added Gene Wiki support
(edit) @362 [362] 2 years AlexanderPico switch from 'export' to 'setenv' for plato
(edit) @360 [360] 2 years AlexanderPico added tuberculosis
(edit) @359 [359] 2 years AlexanderPico fixed mysql-quotes bug
(edit) @358 [358] 2 years AlexanderPico updated tuberculosis entry
(edit) @357 [357] 2 years AlexanderPico added pig and tuberculosis to run list
(edit) @356 [356] 2 years AlexanderPico fixed attr table bug
(edit) @355 [355] 2 years AlexanderPico updated dir references for plato
(edit) @354 [354] 2 years AlexanderPico updated to work on plato
(edit) @353 [353] 2 years AlexanderPico further adapted to work with plato, plus mods to handling of GO when …
(edit) @352 [352] 2 years AlexanderPico updating specification of home directory for use on plato
(edit) @351 [351] 2 years AlexanderPico updated bacteria script and substituted use of tmp dir
(edit) @350 [350] 2 years AlexanderPico added sus scrofa (pig)
(edit) @349 [349] 2 years AlexanderPico adapted to work with new 'genmapp_' prefixed databases
(edit) @348 [348] 2 years AlexanderPico without commented out lines
(edit) @321 [321] 2 years martijn New HMDB maker and Quality Control script
(edit) @314 [314] 2 years thomas added script to copy derby database to mysql
(edit) @301 [301] 2 years AlexanderPico modified to distinguish derby productions from web service
(edit) @292 [292] 2 years AlexanderPico updated to produce sql files for database reconstruction (bridedbrest + …
(edit) @285 [285] 2 years AlexanderPico added dump of table structure for 2-step reconstruction later
(edit) @284 [284] 2 years AlexanderPico fixed index creation on MySQLDerby attributes table
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