root

Revision Log Mode:


Legend:

Added
Modified
Copied or renamed
Rev Chgset Date Author Log Message
(edit) @413 [413] 3 months AlexanderPico added release variable
(edit) @412 [412] 3 months rodche Modified and temporarily disabled biomart (was down) tests; …
(edit) @411 [411] 3 months martijn Benchmarks: Added reference to measure module back
(edit) @410 [410] 3 months martijn Remove generated file BridgeDb?.properties from repository
(edit) @409 [409] 3 months martijn Extra utility method, more documentation of utility methods
(edit) @408 [408] 3 months bturner Convert all db calls to follow canonical pattern of resource usage.
(edit) @407 [407] 3 months bturner
(edit) @406 [406] 3 months bturner
(edit) @405 [405] 3 months bturner start of connection pooling
(edit) @404 [404] 3 months bturner
(edit) @403 [403] 3 months martijn Quality Control tool for checking quality of new BridgeDerby builds. Put …
(edit) @402 [402] 3 months martijn Fixed failed test in synergizer by not supporting xrefExists anymore. This …
(edit) @401 [401] 3 months rodche only ToDo? updated (was a mistake)
(edit) @400 [400] 3 months rodche mavenized ..webservice.synergizer (test fails due to the …
(edit) @399 [399] 3 months AlexanderPico
(edit) @398 [398] 3 months AlexanderPico updating HUGO
(edit) @397 [397] 3 months bturner Need to handle case where user doesn't have config file.
(edit) @396 [396] 3 months bturner for ant (run within the module) and for maven the files need to be located …
(edit) @395 [395] 3 months bturner using maven seems to instantiate the server differently than with ant -- …
(edit) @394 [394] 3 months bturner add new (maven) modules: rdb and server
(edit) @393 [393] 3 months bturner add new (maven) modules: rdb and server
(edit) @392 [392] 3 months bturner add new (maven) modules: rdb and server
(edit) @391 [391] 3 months rodche Previously missing text file added; Also - generated classes and other …
(edit) @390 [390] 3 months bturner test
(edit) @389 [389] 3 months bturner test
(edit) @388 [388] 3 months AlexanderPico
(edit) @387 [387] 3 months AlexanderPico Adding KEGG Genes and BioCyc? datasources
(edit) @386 [386] 3 months AlexanderPico
(edit) @385 [385] 3 months AlexanderPico
(edit) @384 [384] 3 months AlexanderPico
(edit) @383 [383] 3 months AlexanderPico
(edit) @382 [382] 3 months AlexanderPico
(edit) @381 [381] 3 months AlexanderPico
(edit) @380 [380] 3 months AlexanderPico
(edit) @379 [379] 3 months AlexanderPico
(edit) @378 [378] 3 months AlexanderPico adding Mtuberculosis
(edit) @377 [377] 3 months AlexanderPico updating to work on plato cluster
(edit) @376 [376] 3 months AlexanderPico setting to older Derby bin; commenting out debug line
(edit) @375 [375] 3 months AlexanderPico fixing export syntax
(edit) @374 [374] 3 months AlexanderPico switching back to export from setenv…
(edit) @373 [373] 3 months AlexanderPico added Zea mays, fixed typos and whitespace issues, fix #54
(edit) @372 [372] 3 months AlexanderPico corrected case error on Zea Mays; fix #54
(edit) @371 [371] 3 months AlexanderPico removed debug statements
(edit) @370 [370] 3 months AlexanderPico modified handling of species aliases for latest API
(edit) @369 [369] 3 months AlexanderPico updated to work on plato cluster
(edit) @368 [368] 3 months AlexanderPico updated to work on plato cluster
(edit) @367 [367] 3 months AlexanderPico Added Gene Wiki as a datasource
(edit) @366 [366] 3 months AlexanderPico fixed table import for plato
(edit) @365 [365] 3 months AlexanderPico Added HGNC symbol as primary id
(edit) @364 [364] 3 months AlexanderPico Added Gene Wiki support
(edit) @363 [363] 4 months rodche "Mavenized" are 6 modules: org.bridgedb, org.bridgedb.bio, …
(edit) @362 [362] 4 months AlexanderPico switch from 'export' to 'setenv' for plato
(edit) @361 [361] 4 months AlexanderPico added M.tuberculosis
(edit) @360 [360] 4 months AlexanderPico added tuberculosis
(edit) @359 [359] 4 months AlexanderPico fixed mysql-quotes bug
(edit) @358 [358] 4 months AlexanderPico updated tuberculosis entry
(edit) @357 [357] 4 months AlexanderPico added pig and tuberculosis to run list
(edit) @356 [356] 4 months AlexanderPico fixed attr table bug
(edit) @355 [355] 4 months AlexanderPico updated dir references for plato
(edit) @354 [354] 4 months AlexanderPico updated to work on plato
(edit) @353 [353] 4 months AlexanderPico further adapted to work with plato, plus mods to handling of GO when …
(edit) @352 [352] 4 months AlexanderPico updating specification of home directory for use on plato
(edit) @351 [351] 4 months AlexanderPico updated bacteria script and substituted use of tmp dir
(edit) @350 [350] 4 months AlexanderPico added sus scrofa (pig)
(edit) @349 [349] 4 months AlexanderPico adapted to work with new 'genmapp_' prefixed databases
(edit) @348 [348] 4 months AlexanderPico without commented out lines
(edit) @347 [347] 4 months martijn Fixed NPE in URLEncoder
(edit) @346 [346] 4 months martijn final eclipse project file
(edit) @345 [345] 4 months martijn More eclipse project files
(edit) @344 [344] 4 months martijn Fixed project names
(edit) @343 [343] 4 months martijn Checking in eclipse project and classpath files, a little experiment
(edit) @342 [342] 4 months martijn Release 1.0.1.0 tag
(edit) @341 [341] 4 months martijn 1.0.1.x release branch
(edit) @340 [340] 4 months martijn New minor release
(edit) @339 [339] 4 months martijn Updated CronosWSDL link from email communication with cronos people
(edit) @338 [338] 5 months martijn Fixed getAttributes to return more than just the first attribute
(edit) @337 [337] 5 months martijn Fixed batchmapper.bat. Batchmapper uses transitive mapping by default. …
(edit) @336 [336] 5 months martijn Fixed directory names in binary dist
(edit) @335 [335] 6 months martijn DerbyClient? running on wikipathways again, adjusted test
(edit) @334 [334] 6 months martijn Fix batchmapper and server startup scripts
(edit) @333 [333] 6 months martijn Fix major bug in transitive ID mapping, where some mappings are missed
(edit) @332 [332] 6 months martijn Source code for Measure.jar
(edit) @331 [331] 6 months martijn New point release, includes updated version no
(edit) @330 [330] 6 months martijn Forgot to update version no.
(edit) @329 [329] 6 months martijn Update version number
(edit) @328 [328] 6 months martijn 1.0.0 release tag
(edit) @327 [327] 6 months martijn 1.0 release branch
(edit) @326 [326] 6 months martijn Fixed: complains about schemaversion for completely unrelated errors
(edit) @325 [325] 6 months martijn Fix classpath in jUnit testing
(edit) @324 [324] 6 months martijn Fixes NPE in DataSource?.isMetabolite()
(edit) @323 [323] 6 months martijn Added WikiPathways?, removed urn:bridgedb urns. Fixes #46 and #50.
(edit) @322 [322] 6 months martijn Added contents page, to get a list of available organisms. Fixes #37
(edit) @321 [321] 6 months martijn New HMDB maker and Quality Control script
(edit) @320 [320] 6 months martijn Tweaked rdb.construct package for coming HMDB update
(edit) @319 [319] 6 months martijn Integrated o.b.rdb.construct in global build
(edit) @318 [318] 7 months martijn Made SimpleGdb? thread-safe. Instantiate with con- nection string instead …
(edit) @317 [317] 7 months martijn Refactoring dead code: Removed all methods pertaining to constructing …
(edit) @316 [316] 7 months martijn refactor LazyPst? to also handle resultset and connection
(edit) @315 [315] 7 months martijn Accidentally checked in old version of GdbProvider?, reverted. Adjusted …
(edit) @314 [314] 7 months thomas added script to copy derby database to mysql
Note: See TracRevisionLog for help on using the revision log.