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Rev Chgset Date Author Log Message
(edit) @427 [427] 3 hours martijn Bumped version no.
(edit) @426 [426] 3 hours martijn Synced datasources.txt with MIRIAM
(edit) @425 [425] 5 hours martijn Change to eclipse classpath
(edit) @424 [424] 5 hours martijn Make WikiPahtways? primary
(edit) @423 [423] 26 hours martijn datasources.txt has been moved to org.bridgedb.bio/resources
(edit) @422 [422] 3 weeks thomas added pig to datasources.txt
(edit) @421 [421] 3 weeks AlexanderPico fixing whitespace
(edit) @420 [420] 3 weeks AlexanderPico adding gene wiki to *other* datasources.txt!
(edit) @419 [419] 5 weeks AlexanderPico updating unique Sc handling
(edit) @418 [418] 5 weeks AlexanderPico added Kg and Bc to build step
(edit) @417 [417] 5 weeks AlexanderPico added gene wiki to build step
(edit) @416 [416] 5 weeks AlexanderPico modified categorization
(edit) @415 [415] 5 weeks AlexanderPico
(edit) @414 [414] 5 weeks AlexanderPico added funcgen dl
(edit) @413 [413] 5 weeks AlexanderPico added release variable
(edit) @412 [412] 5 weeks rodche Modified and temporarily disabled biomart (was down) tests; …
(edit) @411 [411] 6 weeks martijn Benchmarks: Added reference to measure module back
(edit) @410 [410] 6 weeks martijn Remove generated file BridgeDb?.properties from repository
(edit) @409 [409] 7 weeks martijn Extra utility method, more documentation of utility methods
(edit) @408 [408] 7 weeks bturner Convert all db calls to follow canonical pattern of resource usage.
(edit) @407 [407] 7 weeks bturner
(edit) @406 [406] 7 weeks bturner
(edit) @405 [405] 7 weeks bturner start of connection pooling
(edit) @404 [404] 7 weeks bturner
(edit) @403 [403] 7 weeks martijn Quality Control tool for checking quality of new BridgeDerby builds. Put …
(edit) @402 [402] 7 weeks martijn Fixed failed test in synergizer by not supporting xrefExists anymore. This …
(edit) @401 [401] 8 weeks rodche only ToDo? updated (was a mistake)
(edit) @400 [400] 8 weeks rodche mavenized ..webservice.synergizer (test fails due to the …
(edit) @399 [399] 8 weeks AlexanderPico
(edit) @398 [398] 2 months AlexanderPico updating HUGO
(edit) @397 [397] 2 months bturner Need to handle case where user doesn't have config file.
(edit) @396 [396] 2 months bturner for ant (run within the module) and for maven the files need to be located …
(edit) @395 [395] 2 months bturner using maven seems to instantiate the server differently than with ant -- …
(edit) @394 [394] 2 months bturner add new (maven) modules: rdb and server
(edit) @393 [393] 2 months bturner add new (maven) modules: rdb and server
(edit) @392 [392] 2 months bturner add new (maven) modules: rdb and server
(edit) @391 [391] 2 months rodche Previously missing text file added; Also - generated classes and other …
(edit) @390 [390] 2 months bturner test
(edit) @389 [389] 2 months bturner test
(edit) @388 [388] 2 months AlexanderPico
(edit) @387 [387] 2 months AlexanderPico Adding KEGG Genes and BioCyc? datasources
(edit) @386 [386] 2 months AlexanderPico
(edit) @385 [385] 2 months AlexanderPico
(edit) @384 [384] 2 months AlexanderPico
(edit) @383 [383] 2 months AlexanderPico
(edit) @382 [382] 2 months AlexanderPico
(edit) @381 [381] 2 months AlexanderPico
(edit) @380 [380] 2 months AlexanderPico
(edit) @379 [379] 2 months AlexanderPico
(edit) @378 [378] 2 months AlexanderPico adding Mtuberculosis
(edit) @377 [377] 2 months AlexanderPico updating to work on plato cluster
(edit) @376 [376] 2 months AlexanderPico setting to older Derby bin; commenting out debug line
(edit) @375 [375] 2 months AlexanderPico fixing export syntax
(edit) @374 [374] 2 months AlexanderPico switching back to export from setenv…
(edit) @373 [373] 2 months AlexanderPico added Zea mays, fixed typos and whitespace issues, fix #54
(edit) @372 [372] 2 months AlexanderPico corrected case error on Zea Mays; fix #54
(edit) @371 [371] 2 months AlexanderPico removed debug statements
(edit) @370 [370] 2 months AlexanderPico modified handling of species aliases for latest API
(edit) @369 [369] 2 months AlexanderPico updated to work on plato cluster
(edit) @368 [368] 2 months AlexanderPico updated to work on plato cluster
(edit) @367 [367] 2 months AlexanderPico Added Gene Wiki as a datasource
(edit) @366 [366] 2 months AlexanderPico fixed table import for plato
(edit) @365 [365] 2 months AlexanderPico Added HGNC symbol as primary id
(edit) @364 [364] 2 months AlexanderPico Added Gene Wiki support
(edit) @363 [363] 2 months rodche "Mavenized" are 6 modules: org.bridgedb, org.bridgedb.bio, …
(edit) @362 [362] 2 months AlexanderPico switch from 'export' to 'setenv' for plato
(edit) @361 [361] 2 months AlexanderPico added M.tuberculosis
(edit) @360 [360] 3 months AlexanderPico added tuberculosis
(edit) @359 [359] 3 months AlexanderPico fixed mysql-quotes bug
(edit) @358 [358] 3 months AlexanderPico updated tuberculosis entry
(edit) @357 [357] 3 months AlexanderPico added pig and tuberculosis to run list
(edit) @356 [356] 3 months AlexanderPico fixed attr table bug
(edit) @355 [355] 3 months AlexanderPico updated dir references for plato
(edit) @354 [354] 3 months AlexanderPico updated to work on plato
(edit) @353 [353] 3 months AlexanderPico further adapted to work with plato, plus mods to handling of GO when …
(edit) @352 [352] 3 months AlexanderPico updating specification of home directory for use on plato
(edit) @351 [351] 3 months AlexanderPico updated bacteria script and substituted use of tmp dir
(edit) @350 [350] 3 months AlexanderPico added sus scrofa (pig)
(edit) @349 [349] 3 months AlexanderPico adapted to work with new 'genmapp_' prefixed databases
(edit) @348 [348] 3 months AlexanderPico without commented out lines
(edit) @347 [347] 3 months martijn Fixed NPE in URLEncoder
(edit) @346 [346] 3 months martijn final eclipse project file
(edit) @345 [345] 3 months martijn More eclipse project files
(edit) @344 [344] 3 months martijn Fixed project names
(edit) @343 [343] 3 months martijn Checking in eclipse project and classpath files, a little experiment
(edit) @342 [342] 3 months martijn Release 1.0.1.0 tag
(edit) @341 [341] 3 months martijn 1.0.1.x release branch
(edit) @340 [340] 3 months martijn New minor release
(edit) @339 [339] 3 months martijn Updated CronosWSDL link from email communication with cronos people
(edit) @338 [338] 4 months martijn Fixed getAttributes to return more than just the first attribute
(edit) @337 [337] 4 months martijn Fixed batchmapper.bat. Batchmapper uses transitive mapping by default. …
(edit) @336 [336] 4 months martijn Fixed directory names in binary dist
(edit) @335 [335] 4 months martijn DerbyClient? running on wikipathways again, adjusted test
(edit) @334 [334] 4 months martijn Fix batchmapper and server startup scripts
(edit) @333 [333] 4 months martijn Fix major bug in transitive ID mapping, where some mappings are missed
(edit) @332 [332] 4 months martijn Source code for Measure.jar
(edit) @331 [331] 5 months martijn New point release, includes updated version no
(edit) @330 [330] 5 months martijn Forgot to update version no.
(edit) @329 [329] 5 months martijn Update version number
(edit) @328 [328] 5 months martijn 1.0.0 release tag
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