Changeset 561

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Timestamp:
01/09/12 19:24:52 (5 months ago)
Author:
martijn
Message:

Fixed mismatch between datasources.txt and BioDataSources?

Location:
trunk/org.bridgedb.bio
Files:
2 modified

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  • trunk/org.bridgedb.bio/resources/org/bridgedb/bio/datasources.txt

    r560 r561  
    174174MicrosporidiaDB         http://microsporidiadb.org/micro/       http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id     ECU03_0820i                     1       urn:miriam:microsporidia        ^\w+$   MicrosporidiaDB 
    175175MINT            http://mint.bio.uniroma2.it/mint/       http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$id MINT-10000      pathway         1       urn:miriam:mint ^MINT\-\d{1,5}$ MINT 
    176 miRBase mature sequence         http://www.mirbase.org/ http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$id MIMAT0000001                    1       urn:miriam:mirbase.mature       MIMAT\d{7}      miRBase mature sequence 
     176miRBase mature sequence Mbm     http://www.mirbase.org/ http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$id MIMAT0000001                    1       urn:miriam:mirbase.mature       MIMAT\d{7}      miRBase mature sequence 
    177177miRBase Sequence        Mb      http://microrna.sanger.ac.uk/   http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?acc=$id   MI0000001       gene            1       urn:miriam:mirbase      MI\d{7} miRBase Sequence 
    178178MIRIAM Registry collection              http://www.ebi.ac.uk/miriam/    http://www.ebi.ac.uk/miriam/main/$id    MIR:00000008                    1       urn:miriam:miriam.collection    ^MIR:000\d{5}$  MIRIAM Registry collection 

  • trunk/org.bridgedb.bio/src/org/bridgedb/bio/BioDataSource.java

    r560 r561  
    154154                "Mb", "miRBase").asDataSource(); 
    155155        public static final DataSource MIRBASE_MATURE = DataSource.register ( 
    156                 "Mbm", "miRBase mature").asDataSource(); 
     156                "Mbm", "miRBase mature sequence").asDataSource(); 
    157157        public static final DataSource MAIZE_GDB = DataSource.register ( 
    158158                "Mg", "MaizeGDB").asDataSource();