Changeset 546 for trunk

Timestamp:

11/22/11 02:09:09 (6 months ago)

Author:

AlexanderPico

Message:

updated GO namespace as Symbol

Files:

• trunk/dbbuilder/src/org/bridgedb/extract/Ensembl_ETL_Device_v18_local.pl (modified) (4 diffs)

trunk/dbbuilder/src/org/bridgedb/extract/Ensembl_ETL_Device_v18_local.pl

@@ -1776 +1776 @@
                 $$GeneTables{GeneOntology}{$count.$dot.$subcount{GeneOntology}} = [$dbe_primary_id, $dbe_description, $namespace];
                 $$Ensembl_GeneTables{GeneOntology}{$count.$dot.$subcount{GeneOntology}} = [$gene_stable_id, $dbe_primary_id];
-                $$Attributes{GeneOntology}{$count.$dot.$subcount{GeneOntology}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GeneOntology}{'NAME'}[1]), mysql_quotes('Description'), $dbe_description]; 
+                $$Attributes{GeneOntology}{$count.$dot.$subcount{GeneOntology}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GeneOntology}{'NAME'}[1]), mysql_quotes('Symbol'), $dbe_description]; 
                 ++$subcount{GeneOntology};
             }
@@ -1793 +1793 @@
                         $$GeneTables{GOslimBP}{$count.$dot.$subcount{GOslimBP}} = [$dbe_primary_id, $name];
                         $$Ensembl_GeneTables{GOslimBP}{$count.$dot.$subcount{GOslimBP}} = [$gene_stable_id, $dbe_primary_id];
-                        $$Attributes{GOslimBP}{$count.$dot.$subcount{GOslimBP}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimBP}{'NAME'}[1]), mysql_quotes('Description'), $name];     
+                        $$Attributes{GOslimBP}{$count.$dot.$subcount{GOslimBP}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimBP}{'NAME'}[1]), mysql_quotes('Symbol'), $name];  
                         ++$subcount{GOslimBP};
                     }
@@ -1800 +1800 @@
                         $$GeneTables{GOslimCC}{$count.$dot.$subcount{GOslimCC}} = [$dbe_primary_id, $name];
                         $$Ensembl_GeneTables{GOslimCC}{$count.$dot.$subcount{GOslimCC}} = [$gene_stable_id, $dbe_primary_id];
-                        $$Attributes{GOslimCC}{$count.$dot.$subcount{GOslimCC}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimCC}{'NAME'}[1]), mysql_quotes('Description'), $name];
+                        $$Attributes{GOslimCC}{$count.$dot.$subcount{GOslimCC}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimCC}{'NAME'}[1]), mysql_quotes('Symbol'), $name];
                         ++$subcount{GOslimCC};
                     }
@@ -1807 +1807 @@
                         $$GeneTables{GOslimMF}{$count.$dot.$subcount{GOslimMF}} = [$dbe_primary_id, $name];
                         $$Ensembl_GeneTables{GOslimMF}{$count.$dot.$subcount{GOslimMF}} = [$gene_stable_id, $dbe_primary_id];
-                        $$Attributes{GOslimMF}{$count.$dot.$subcount{GOslimMF}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimMF}{'NAME'}[1]), mysql_quotes('Description'), $name];
+                        $$Attributes{GOslimMF}{$count.$dot.$subcount{GOslimMF}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimMF}{'NAME'}[1]), mysql_quotes('Symbol'), $name];
                         ++$subcount{GOslimMF};
                     }