Changeset 537 for trunk

Timestamp:

07/04/11 00:58:12 (11 months ago)

Author:

AlexanderPico

Message:

changed "Term" to "Description" for better bridgedb support

Files:

• trunk/dbbuilder/src/org/bridgedb/extract/Ensembl_ETL_Device_v18_local.pl (modified) (2 diffs)

trunk/dbbuilder/src/org/bridgedb/extract/Ensembl_ETL_Device_v18_local.pl

@@ -1775 +1775 @@
                 $$GeneTables{GeneOntology}{$count.$dot.$subcount{GeneOntology}} = [$dbe_primary_id, $name, $namespace];
                 $$Ensembl_GeneTables{GeneOntology}{$count.$dot.$subcount{GeneOntology}} = [$gene_stable_id, $dbe_primary_id];
-                $$Attributes{GeneOntology}{$count.$dot.$subcount{GeneOntology}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GeneOntology}{'NAME'}[1]), mysql_quotes('Term'), $name]; 
+                $$Attributes{GeneOntology}{$count.$dot.$subcount{GeneOntology}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GeneOntology}{'NAME'}[1]), mysql_quotes('Description'), $name]; 
                 ++$subcount{GeneOntology};
             }
@@ -1791 +1791 @@
                         $$GeneTables{GOslimBP}{$count.$dot.$subcount{GOslimBP}} = [$dbe_primary_id, $name];
                         $$Ensembl_GeneTables{GOslimBP}{$count.$dot.$subcount{GOslimBP}} = [$gene_stable_id, $dbe_primary_id];
-                        $$Attributes{GOslimBP}{$count.$dot.$subcount{GOslimBP}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimBP}{'NAME'}[1]), mysql_quotes('Term'), $name];    
+                        $$Attributes{GOslimBP}{$count.$dot.$subcount{GOslimBP}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimBP}{'NAME'}[1]), mysql_quotes('Description'), $name];     
                         ++$subcount{GOslimBP};
                   } elsif ($namespace =~ /\'cellular_component\'/){
                         $$GeneTables{GOslimCC}{$count.$dot.$subcount{GOslimCC}} = [$dbe_primary_id, $name];
                         $$Ensembl_GeneTables{GOslimCC}{$count.$dot.$subcount{GOslimCC}} = [$gene_stable_id, $dbe_primary_id];
-                        $$Attributes{GOslimCC}{$count.$dot.$subcount{GOslimCC}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimCC}{'NAME'}[1]), mysql_quotes('Term'), $name];
+                        $$Attributes{GOslimCC}{$count.$dot.$subcount{GOslimCC}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimCC}{'NAME'}[1]), mysql_quotes('Description'), $name];
                         ++$subcount{GOslimCC};
                   } elsif ($namespace =~ /\'molecular_function\'/){
                         $$GeneTables{GOslimMF}{$count.$dot.$subcount{GOslimMF}} = [$dbe_primary_id, $name];
                         $$Ensembl_GeneTables{GOslimMF}{$count.$dot.$subcount{GOslimMF}} = [$gene_stable_id, $dbe_primary_id];
-                        $$Attributes{GOslimMF}{$count.$dot.$subcount{GOslimMF}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimMF}{'NAME'}[1]), mysql_quotes('Term'), $name];
+                        $$Attributes{GOslimMF}{$count.$dot.$subcount{GOslimMF}.$dot.'1'} = [$dbe_primary_id, mysql_quotes( $$GeneTables{GOslimMF}{'NAME'}[1]), mysql_quotes('Description'), $name];
                         ++$subcount{GOslimMF};
                   } else {