| 1 | | TAIR A http://www.arabidopsis.org/ AT1G35255 gene Arabidopsis thaliana 1 urn:miriam:tair.locus |
| 2 | | Agilent Ag A_24_P98555 probe 0 Ag |
| 3 | | BioCyc Bc http://www.biocyc.org http://www.biocyc.org/getid?id=$ID EcoCyc:MON0-2657 gene 1 Bc |
| 4 | | BioGrid Bg http://www.thebiogrid.org/ probe 0 urn:miriam:biogrid |
| 5 | | Cint C probe 0 C |
| 6 | | CAS Ca http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?regno=$ID metabolite 1 Ca |
| 7 | | CCDS Cc http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=ALLFIELDS&DATA=$ID CCDS43989 probe 0 Cc |
| 8 | | ChEBI Ce http://www.ebi.ac.uk/chebi/searchId=CHEBI:$ID metabolite 1 urn:miriam:obo.chebi |
| 9 | | HMDB Ch http://www.hmdb.ca/ http://www.hmdb.ca/metabolites/$ID HMDB00001 metabolite 1 urn:miriam:hmdb |
| 10 | | Kegg Compound Ck http://www.genome.jp/dbget-bin/www_bget?cpd:$ID metabolite 1 urn:miriam:kegg.compound |
| 11 | | PubChem Cp http://pubchem.ncbi.nlm.nih.gov/ http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=$ID metabolite 1 urn:miriam:pubchem.compound |
| 12 | | Chemspider Cs http://www.chemspider.com/ http://www.chemspider.com/Chemical-Structure.$ID.html metabolite 1 Cs |
| 13 | | SGD D http://www.yeastgenome.org/ http://db.yeastgenome.org/cgi-bin/locus.pl?locus=$ID CUP1-2 gene Saccharomyces cerevisiae 1 urn:miriam:sgd |
| 14 | | EC Number E http://www.brenda-enzymes.info/ http://www.brenda-enzymes.info/php/result_flat.php4?ecno=$ID 2.7.1.71 gene 1 urn:miriam:brenda |
| 15 | | Ecoli Ec gene Escherichia coli 1 Ec |
| 16 | | EMBL Em http://www.ebi.ac.uk/embl http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&id=$ID AL030996 gene 1 urn:miriam:insdc |
| 17 | | Ensembl En http://www.ensembl.org http://www.ensembl.org/Homo_sapiens/Search/Summary?_q=$ID ENSG00000139618 gene 0 urn:miriam:ensembl |
| 18 | | Ensembl Mosquito EnAg http://www.ensembl.org http://www.ensembl.org/Anopheles_gambiae/Gene/Summary?_q=$ID AGAP006864 gene Anopheles gambiae 1 EnAg |
| 19 | | Gramene Arabidopsis EnAt http://www.gramene.org/ http://www.gramene.org/Arabidopsis_thaliana/Gene/Summary?g=$ID ATMG01360-TAIR-G gene Arabidopsis thaliana 1 EnAt |
| 20 | | Ensembl B. subtilis EnBs http://www.ensembl.org http://bacteria.ensembl.org/Bacillus/B_subtilis/Gene/Summary?g=$ID EBBACG00000000013 gene Bacillus subtilis 1 EnBs |
| 21 | | Ensembl Cow EnBt http://www.ensembl.org http://www.ensembl.org/Bos_taurus/Gene/Summary?g=$ID ENSBTAG00000043548 gene Bos taurus 1 EnBt |
| 22 | | Ensembl C. elegans EnCe http://www.ensembl.org http://www.ensembl.org/Caenorhabditis_elegans/Gene/Summary?g=$ID Y42H9B.1 gene Caenorhabditis elegans 1 EnCe |
| 23 | | Ensembl Dog EnCf http://www.ensembl.org http://www.ensembl.org/Canis_familiaris/Gene/Summary?g=$ID ENSCAFG00000025860 gene Canis familiaris 1 EnCf |
| 24 | | Ensembl Fruitfly EnDm http://www.ensembl.org http://www.ensembl.org/Drosophila_melanogaster/Gene/Summary?g=$ID FBgn0032956 gene Drosophila melanogaster 1 EnDm |
| 25 | | Ensembl Zebrafish EnDr http://www.ensembl.org http://www.ensembl.org/Danio_rerio/Gene/Summary?g=$ID ENSDARG00000024771 gene Danio rerio 1 EnDr |
| 26 | | Ensembl E. coli EnEc http://www.ensembl.org http://bacteria.ensembl.org/Escherichia_Shigella/E_coli_K12/Gene/Summary?g=$ID EBESCG00000000010 gene Escherichia coli 1 EnEc |
| 27 | | Ensembl Chicken EnGg http://www.ensembl.org http://www.ensembl.org/Gallus_gallus/Gene/Summary?g=$ID ENSGALG00000021736 gene Gallus gallus 1 EnGg |
| 28 | | Ensembl Human EnHs http://www.ensembl.org http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=$ID ENSG00000139618 gene Homo sapiens 1 EnHs |
| 29 | | Ensembl Mouse EnMm http://www.ensembl.org http://www.ensembl.org/Mus_musculus/Gene/Summary?g=$ID ENSMUSG00000017167 gene Mus musculus 1 EnMm |
| 30 | | Ensembl M. tuberculosis EnMx http://www.ensembl.org http://bacteria.ensembl.org/Mycobacterium/M_tuberculosis_H37Rv/Gene/Summary?g=$ID EBMYCG00000003122 gene Mycobacterium tuberculosis 1 EnMx |
| 31 | | Gramene Rice EnOj http://www.gramene.org/ http://www.gramene.org/Oryza_sativa_japonica/Gene/Summary?db=core;g=$ID osa-MIR171a gene Oryza sativa 1 EnOj |
| 32 | | Ensembl Chimp EnPt http://www.ensembl.org http://www.ensembl.org/Pan_troglodytes/Gene/Summary?g=$ID ENSPTRG00000036034 gene Pan troglodytes 1 EnPt |
| 33 | | Ensembl Horse EnQc http://www.ensembl.org http://www.ensembl.org/Equus_caballus/Gene/Summary?g=$ID ENSECAG00000026160 gene Equus caballus 1 EnQc |
| 34 | | Ensembl Rat EnRn http://www.ensembl.org http://www.ensembl.org/Rattus_norvegicus/Gene/Summary?g=$ID ENSRNOG00000016648 gene Rattus norvegicus 1 EnRn |
| 35 | | Ensembl Yeast EnSc http://www.ensembl.org http://www.ensembl.org/Saccharomyces_cerevisiae/Gene/Summary?g=$ID YGR147C gene Saccharomyces cerevisiae 1 EnSc |
| 36 | | Ensembl Xenopus EnXt http://www.ensembl.org http://www.ensembl.org/Xenopus_tropicalis/Gene/Summary?g=$ID ENSXETG00000029448 gene Xenopus tropicalis 1 EnXt |
| 37 | | Ensembl Pig EnSs http://www.ensembl.org http://www.ensembl.org/Sus_scrofa/Gene/Summary?g=$ID ENSSSCG00000004244 gene Sus scrofa 1 EnSs |
| 38 | | Gramene Maize EnZm http://www.ensembl.org http://www.maizesequence.org/Zea_mays/Gene/Summary?g=$ID GRMZM2G174107 gene Zea mays 1 EnZm |
| 39 | | FlyBase F http://flybase.bio.indiana.edu/.bin/fbidq.html?$ID FBgn0031208 gene Drosophila melanogaster 1 urn:miriam:flybase |
| 40 | | GenBank G probe 0 G |
| 41 | | CodeLink Ge GE86325 probe 0 Ge |
| 42 | | Gramene Genes DB Gg http://www.gramene.org/ http://www.gramene.org/db/genes/search_gene?acc=$ID GR:0060184 gene 1 Gg |
| 43 | | Gramene Literature Gl http://www.gramene.org/ http://www.gramene.org/db/literature/pub_search?ref_id=$ID 6200 probe 0 Gl |
| 44 | | GenPept Gp AAH72400 probe 0 Gp |
| 45 | | Gramene Pathway Gp http://www.gramene.org/pathway PROTEIN-KINASE-RXN probe 0 Gp |
| 46 | | Gene Wiki Gw http://en.wikipedia.org/wiki/Portal:Gene_Wiki http://plugins.gnf.org/cgi-bin/wp.cgi?id=$ID 1017 gene 0 Gw |
| 47 | | HGNC H http://www.genenames.org/ http://www.genenames.org/data/hgnc_data.php?match=$ID 25068 gene Homo sapiens 1 urn:miriam:hgnc |
| 48 | | HsGene Hs gene Homo sapiens 1 Hs |
| 49 | | InterPro I http://www.ebi.ac.uk/interpro http://www.ebi.ac.uk/interpro/IEntry?ac=$ID domain 0 urn:miriam:interpro |
| 50 | | Illumina Il ILMN_5668 probe 0 Il |
| 51 | | IPI Ip http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[IPI-acc:$ID] IPI00020529 probe 0 Ip |
| 52 | | IRGSP Gene Ir http://rgp.dna.affrc.go.jp/IRGSP/ Os12g0561000 gene 1 Ir |
| 53 | | KEGG Genes Kg http://www.genome.jp/kegg/genes.html http://www.genome.jp/dbget-bin/www_bget?$ID ecj:JW5076 gene 1 Kg |
| 54 | | Entrez Gene L http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=$ID 1232 gene 1 urn:miriam:entrez.gene |
| 55 | | MGI M http://www.informatics.jax.org/ http://www.informatics.jax.org/searches/accession_report.cgi?id=$ID MGI:2687328 gene Mus musculus 1 urn:miriam:mgd |
| 56 | | miRBase Mb http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?acc=$ID MI0000808 gene 1 Mb |
| 57 | | MaizeGDB Mg http://www.maizegdb.org/cgi-bin/displaylocusresults.cgi?term=$ID acc1 gene Zea mays 1 Mg |
| 58 | | NASC Gene N ATMG00960-TAIR-G gene Arabidopsis thaliana 1 N |
| 59 | | NuGO wiki Nw http://wiki.nugo.org/index.php/$ID HMDB00001 probe 0 Nw |
| 60 | | Other O gene 1 O |
| 61 | | Oryzabase Ob http://www.shigen.nig.ac.jp/rice/oryzabase http://www.shigen.nig.ac.jp/rice/oryzabase/gateway/gatewayAction.do?target=symbol&id=$ID 468 gene Oryza sativa 1 Ob |
| 62 | | OMIM Om http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM&cmd=Search&doptcmdl=Detailed&term=?$ID 608981 probe 0 urn:miriam:OMIM |
| 63 | | Rice Ensembl Gene Os http://www.gramene.org/Oryza_sativa http://www.gramene.org/Oryza_sativa/geneview?gene=$ID LOC_Os04g54800 gene Oryza sativa 1 Os |
| 64 | | PDB Pd http://www.rcsb.org/pdb/home/home.do http://bip.weizmann.ac.il/oca-bin/ocashort?id=$ID 2Z17 gene 1 urn:miriam:pdb |
| 65 | | Pfam Pf http://www.sanger.ac.uk/Software/Pfam http://www.sanger.ac.uk//cgi-bin/Pfam/getacc?$ID gene 1 urn:miriam:pfam |
| 66 | | PlantGDB Pl http://www.plantgdb.org/ PUT-157a-Vitis_vinifera-37378 gene 1 Q |
| 67 | | RefSeq Q http://www.ncbi.nlm.nih.gov/RefSeq http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&cmd=search&term=$ID NM_001054966 gene 1 urn:miriam:refseq |
| 68 | | RGD R http://rgd.mcw.edu/ http://rgd.mcw.edu/generalSearch/RgdSearch.jsp?quickSearch=1&searchKeyword=$ID 1587276 gene Rattus norvegicus 1 urn:miriam:rgd |
| 69 | | Rfam Rf http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?$ID RF00066 gene 1 Rf |
| 70 | | Uniprot/TrEMBL S http://www.expasy.uniprot.org/ http://www.expasy.org/uniprot/$ID P57770 protein 1 urn:miriam:uniprot |
| 71 | | dbSNP Sn gene 1 Sn |
| 72 | | GeneOntology T http://www.geneontology.org/ http://godatabase.org/cgi-bin/go.cgi?view=details&search_constraint=terms&depth=0&query=$ID GO:0005634 probe 0 urn:miriam:obo.go |
| 73 | | TIGR Ti http://www.jcvi.org/ 12012.t00308 gene 1 Ti |
| 74 | | UniGene U http://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=1548618&SEARCH=$ID Hs.553708 gene 1 U |
| 75 | | UCSC Genome Browser Uc http://genome.ucsc.edu/ http://genome.ucsc.edu/cgi-bin/hgTracks?position=$ID uc001tyh.1 gene 1 Uc |
| 76 | | WormBase W http://www.wormbase.org http://www.wormbase.org/db/gene/gene?name=$ID T24D1.1 gene Caenorhabditis elegans 1 urn:miriam:wormbase |
| 77 | | Wheat gene catalog Wc http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/sql?sql=select+distinct+genewgcreference.number+as+WGC,+reference.name+as+Reference,+reference.title+as+Title,+journal.name+as+Journal,+reference.volume+as+Volume,+reference.pages+as+Page+from+reference+inner+join+genewgcreference+on+genewgcreference.referenceid=reference.id+inner+join+journal+on+reference.journalid=journal.id+where+genewgcreference.number=$ID 341 gene Triticum aestivum 1 Wc |
| 78 | | Wikipedia Wi http://www.wikipedia.org http://en.wikipedia.org/wiki/$ID Acetate metabolite 1 Wi |
| 79 | | Wheat gene names Wn http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/report?class=gene;name=$ID 5S-Rrna-D1_(Triticum) gene Triticum aestivum 1 Wn |
| 80 | | WikiPathways Wp http://www.wikipathways.org http://wikipathways.org/index.php/Pathway:$ID WP702 pathway 1 urn:miriam:wikipathways |
| 81 | | Wheat gene refs Wr http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/cgi-bin/graingenes/report.cgi?class=reference&name=$ID WGS-95-1333 probe Triticum aestivum 0 Wr |
| 82 | | Affy X http://www.affymetrix.com/ http://www.ensembl.org/Homo_sapiens/Search/Results?species=all;feature=OligoProbe;q=$ID 1851_s_at probe 0 X |
| 83 | | ZFIN Z http://zfin.org http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=$ID ZDB-GENE-041118-11 gene Danio rerio 1 urn:miriam:zfin |
| | 1 | 3DMET http://www.3dmet.dna.affrc.go.jp/ http://www.3dmet.dna.affrc.go.jp/html/$id.html B00162 metabolite 1 urn:miriam:3dmet ^B\d{5}$ 3DMET |
| | 2 | Aclame http://aclame.ulb.ac.be/ http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=$id mge:2 gene 1 urn:miriam:aclame ^mge:\d+$ Aclame |
| | 3 | Affy X http://www.affymetrix.com/ http://www.ensembl.org/Homo_sapiens/Search/Results?species=all;feature=OligoProbe;q=$id 1851_s_at probe 0 X .+_at |
| | 4 | Agilent Ag A_24_P98555 probe 0 Ag A_\d+_.+ |
| | 5 | Anatomical Therapeutic Chemical http://www.whocc.no/atc_ddd_index/ http://www.whocc.no/atc_ddd_index/?code=$id A10BA02 metabolite 1 urn:miriam:atc ^(\w+(\-\w+)?(\.\w+)?/)?\d{4,7}(\.\d{4}(v\d+)?)?$ Anatomical Therapeutic Chemical |
| | 6 | ArrayExpress http://www.ebi.ac.uk/arrayexpress/ http://www.ebi.ac.uk/arrayexpress/experiments/$id E-MEXP-1712 experiment 1 urn:miriam:arrayexpress ^[AEP]-\w{4}-\d+$ ArrayExpress |
| | 7 | arXiv http://arxiv.org/ http://arxiv.org/abs/$id 0807.4956v1 publication 1 urn:miriam:arxiv ^(\w+(\-\w+)?(\.\w+)?/)?\d{4,7}(\.\d{4}(v\d+)?)?$ arXiv |
| | 8 | BIND http://www.bind.ca/ http://www.bind.ca/Action?identifier=bindid&idsearch=$id pathway 1 urn:miriam:bind ^\d+$ BIND |
| | 9 | BioCyc Bc http://www.biocyc.org http://www.biocyc.org/getid?id=$id EcoCyc:MON0-2657 gene 1 Bc (Meta|Eco)Cyc:.+ |
| | 10 | BioGrid Bg http://www.thebiogrid.org/index.php http://www.thebiogrid.org/SearchResults/summary/$id 31623 probe 1 urn:miriam:biogrid ^\d+$ BioGRID |
| | 11 | BioModels Database http://www.ebi.ac.uk/biomodels/ http://www.ebi.ac.uk/biomodels-main/$id BIOMD0000000048 pathway 1 urn:miriam:biomodels.db ^(BIOMD|MODEL)\d{10}$ BioModels Database |
| | 12 | BioNumbers http://www.bionumbers.hms.harvard.edu/search.aspx http://www.bionumbers.hms.harvard.edu/bionumber.aspx?s=y&id=$id&ver=1 104674 experiment 1 urn:miriam:bionumbers ^\d+$ BioNumbers |
| | 13 | BioSystems http://www.ncbi.nlm.nih.gov/biosystems/ http://www.ncbi.nlm.nih.gov/biosystems/$id 001 pathway 1 urn:miriam:biosystems ^\d+$ BioSystems |
| | 14 | Brenda Tissue Ontology http://www.ebi.ac.uk/ontology-lookup/ http://www.ebi.ac.uk/ontology-lookup/?termId=$id BTO:0000146 ontology 1 urn:miriam:obo.bto ^BTO:\d{7}$ Brenda Tissue Ontology |
| | 15 | CAS Ca http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?regno=$id metabolite 1 Ca \d+-\d+-\d+ |
| | 16 | CCDS Cc http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=ALLFIELDS&DATA=$id CCDS43989 probe 0 Cc |
| | 17 | Cell Ontology http://www.ebi.ac.uk/ontology-lookup/ http://www.ebi.ac.uk/ontology-lookup/?termId=$id CL:0000232 ontology 1 urn:miriam:obo.clo ^CL:\d{7}$ Cell Ontology |
| | 18 | ChEBI Ce http://www.ebi.ac.uk/chebi/ http://www.ebi.ac.uk/chebi/searchId.do?chebiId=$id CHEBI:36927 metabolite 1 urn:miriam:obo.chebi ^CHEBI:\d+$ ChEBI |
| | 19 | ChEMBL compound http://www.ebi.ac.uk/chembldb http://www.ebi.ac.uk/chembldb/index.php/compound/inspect/$id 210313 metabolite 1 urn:miriam:chembl.compound ^\d+$ ChEMBL compound |
| | 20 | ChEMBL target http://www.ebi.ac.uk/chembldb http://www.ebi.ac.uk/chembldb/index.php/target/inspect/$id 11031 protein 1 urn:miriam:chembl.target ^\d+$ ChEMBL target |
| | 21 | Chemical Component Dictionary http://www.ebi.ac.uk/msd-srv/msdchem/cgi-bin/cgi.pl?APPLICATION=1 http://www.ebi.ac.uk/msd-srv/msdchem/cgi-bin/cgi.pl?FUNCTION=record&ENTITY=CHEM_COMP&PRIMARYKEY=$id&APPLICATION=1 AB0 ontology 1 urn:miriam:pdb-ccd ^\w{3}$ Chemical Component Dictionary |
| | 22 | ChemIDplus http://chem.sis.nlm.nih.gov/chemidplus/chemidheavy.jsp http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?regno=$id 000057272 metabolite 1 urn:miriam:chemidplus ^\d+$ ChemIDplus |
| | 23 | Chemspider Cs http://www.chemspider.com/ http://www.chemspider.com/Chemical-Structure.$id.html metabolite 1 Cs |
| | 24 | Cint C probe 0 C |
| | 25 | CluSTr http://www.ebi.ac.uk/clustr/ http://www.ebi.ac.uk/clustr-srv/CCluster?interpro=yes&cluster_varid=$id HUMAN:55140:308.6 protein 1 urn:miriam:clustr ^[0-9A-Za-z]+:\d+:\d{1,5}(\.\d)?$ CluSTr |
| | 26 | CodeLink Ge GE86325 probe 0 Ge |
| | 27 | Conserved Domain Database http://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$id cd00400 protein 1 urn:miriam:cdd ^cd\d{5}$ Conserved Domain Database |
| | 28 | CTD Chemical http://ctd.mdibl.org/ http://ctd.mdibl.org/detail.go?type=chem&acc=$id D001151 metabolite 1 urn:miriam:ctd.chemical ^D\d+$ CTD Chemical |
| | 29 | CTD Disease http://ctd.mdibl.org/ http://ctd.mdibl.org/detail.go?type=disease&db=MESH&acc=$id D053716 ontology 1 urn:miriam:ctd.disease ^D\d+$ CTD Disease |
| | 30 | CTD Gene http://ctd.mdibl.org/ http://ctd.mdibl.org/basicQuery.go?bqCat=gene&bq=$id 101 gene 1 urn:miriam:ctd.gene ^\d+$ CTD Gene |
| | 31 | Database of Interacting Proteins http://dip.doe-mbi.ucla.edu/ http://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$id DIP-743N protein 1 urn:miriam:dip ^DIP[\:\-]\d{3}[EN]$ Database of Interacting Proteins |
| | 32 | dbSNP Sn gene 1 Sn |
| | 33 | DOI http://www.doi.org/ http://dx.doi.org/$id 10.1038/nbt1156 publication 1 urn:miriam:doi ^(doi\:)?\d{2}\.\d{4}/.*$ DOI |
| | 34 | DrugBank http://www.drugbank.ca/ http://www.drugbank.ca/drugs/$id DB00001 metabolite 1 urn:miriam:drugbank ^DB\d{5}$ DrugBank |
| | 35 | EC Number E http://www.brenda-enzymes.org/ http://www.brenda-enzymes.org/php/result_flat.php4?ecno=$id 1.1.1.1 gene 1 urn:miriam:brenda ^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$ BRENDA |
| | 36 | Ecoli Ec gene 1 Ec |
| | 37 | EMBL Em http://www.ebi.ac.uk/embl/ http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+EntryPage+-e+[EMBL:$id]+-view+EmblEntry X58356 gene 1 urn:miriam:insdc ^\w+(\_)?\d+(\.\d+)?$ Nucleotide Sequence Database |
| | 38 | Ensembl B. subtilis EnBs http://www.ensembl.org http://bacteria.ensembl.org/Bacillus/B_subtilis/Gene/Summary?g=$id EBBACG00000000013 gene 1 EnBs EBBACG\d{11} |
| | 39 | Ensembl C. elegans EnCe http://www.ensembl.org http://www.ensembl.org/Caenorhabditis_elegans/Gene/Summary?g=$id Y42H9B.1 gene 1 EnCe |
| | 40 | Ensembl Chicken EnGg http://www.ensembl.org http://www.ensembl.org/Gallus_gallus/Gene/Summary?g=$id ENSGALG00000021736 gene 1 EnGg ENSGALG\d{11} |
| | 41 | Ensembl Chimp EnPt http://www.ensembl.org http://www.ensembl.org/Pan_troglodytes/Gene/Summary?g=$id ENSPTRG00000036034 gene 1 EnPt ENSPTRG\d{11} |
| | 42 | Ensembl Cow EnBt http://www.ensembl.org http://www.ensembl.org/Bos_taurus/Gene/Summary?g=$id ENSBTAG00000043548 gene 1 EnBt ENSBTAG\d{11} |
| | 43 | Ensembl Dog EnCf http://www.ensembl.org http://www.ensembl.org/Canis_familiaris/Gene/Summary?g=$id ENSCAFG00000025860 gene 1 EnCf ENSCAFG\d{11} |
| | 44 | Ensembl E. coli EnEc http://www.ensembl.org http://bacteria.ensembl.org/Escherichia_Shigella/E_coli_K12/Gene/Summary?g=$id EBESCG00000000010 gene 1 EnEc EBESCG\d{11} |
| | 45 | Ensembl En http://www.ensembl.org/ http://www.ensembl.org/Homo_sapiens/Search/Results?species=all;q=$id ENSG00000139618 gene 1 urn:miriam:ensembl ^ENS[A-Z]*[FPTG]\d{11}$ Ensembl |
| | 46 | Ensembl Fruitfly EnDm http://www.ensembl.org http://www.ensembl.org/Drosophila_melanogaster/Gene/Summary?g=$id FBgn0032956 gene 1 EnDm FBgn\d{7} |
| | 47 | Ensembl Horse EnQc http://www.ensembl.org http://www.ensembl.org/Equus_caballus/Gene/Summary?g=$id ENSECAG00000026160 gene 1 EnQc ENSECAG\d{11} |
| | 48 | Ensembl Human EnHs http://www.ensembl.org http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=$id ENSG00000139618 gene 1 EnHs ENSG\d{11} |
| | 49 | Ensembl Mosquito EnAg http://www.ensembl.org http://www.ensembl.org/Anopheles_gambiae/Gene/Summary?_q=$id AGAP006864 gene 1 EnAg AGAP\d{6} |
| | 50 | Ensembl Mouse EnMm http://www.ensembl.org http://www.ensembl.org/Mus_musculus/Gene/Summary?g=$id ENSMUSG00000017167 gene 1 EnMm ENSMUSG\d{11} |
| | 51 | Ensembl M. tuberculosis EnMx http://www.ensembl.org http://bacteria.ensembl.org/Mycobacterium/M_tuberculosis_H37Rv/Gene/Summary?g=$id EBMYCG00000003122 gene 1 EnMx EBMYCG\d{11} |
| | 52 | Ensembl Pig EnSs http://www.ensembl.org http://www.ensembl.org/Sus_scrofa/Gene/Summary?g=$id ENSSSCG00000004244 gene 1 EnSs |
| | 53 | Ensembl Rat EnRn http://www.ensembl.org http://www.ensembl.org/Rattus_norvegicus/Gene/Summary?g=$id ENSRNOG00000016648 gene 1 EnRn ENSRNOG\d{11} |
| | 54 | Ensembl Xenopus EnXt http://www.ensembl.org http://www.ensembl.org/Xenopus_tropicalis/Gene/Summary?g=$id ENSXETG00000029448 gene 1 EnXt ENSXETG\d{11} |
| | 55 | Ensembl Yeast EnSc http://www.ensembl.org http://www.ensembl.org/Saccharomyces_cerevisiae/Gene/Summary?g=$id YGR147C gene 1 EnSc |
| | 56 | Ensembl Zebrafish EnDr http://www.ensembl.org http://www.ensembl.org/Danio_rerio/Gene/Summary?g=$id ENSDARG00000024771 gene 1 EnDr ENSDARG\d{11} |
| | 57 | Entrez Gene L http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=$id 100010 gene 1 urn:miriam:entrez.gene ^\d+$ Entrez Gene |
| | 58 | Enzyme Nomenclature http://www.ebi.ac.uk/intenz/ http://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$id 1.1.1.1 protein 1 urn:miriam:ec-code ^\d+\.-\.-\.-|\d+\.\d+\.-\.-|\d+\.\d+\.\d+\.-|\d+\.\d+\.\d+\.\d+$ Enzyme Nomenclature |
| | 59 | Evidence Code http://www.ebi.ac.uk/ontology-lookup/ http://www.ebi.ac.uk/ontology-lookup/?termId=$id ECO:0000006 ontology 1 urn:miriam:obo.eco ECO:\d{7}$ Evidence Code |
| | 60 | FlyBase F http://www.flybase.org/ http://www.flybase.org/reports/$id.html FBgn0011293 gene 1 urn:miriam:flybase ^FB\w{2}\d{7}$ FlyBase |
| | 61 | FMA http://www.ebi.ac.uk/ontology-lookup/ http://www.ebi.ac.uk/ontology-lookup/?termId=$id FMA:67112 ontology 1 urn:miriam:obo.fma ^FMA:\d+$ FMA |
| | 62 | GenBank G probe 0 G (\w\d{5})|(\w{2}\d{6})|(\w{3}\d{5}) |
| | 63 | GeneDB http://www.genedb.org/ http://www.genedb.org/gene/$id Cj1536c gene 1 urn:miriam:genedb ^[\w\d\.-]*$ GeneDB |
| | 64 | GeneOntology T http://www.ebi.ac.uk/ego/ http://www.ebi.ac.uk/ego/GTerm?id=$id GO:0006915 probe 1 urn:miriam:obo.go ^GO:\d{7}$ Gene Ontology |
| | 65 | Gene Wiki Gw http://en.wikipedia.org/wiki/Portal:Gene_Wiki http://plugins.gnf.org/cgi-bin/wp.cgi?id=$id 1017 gene 0 Gw \d+ |
| | 66 | GEO http://www.ncbi.nlm.nih.gov/geo/ http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=$id GDS1234 experiment 1 urn:miriam:geo ^GDS\d+$ GEO |
| | 67 | GlycomeDB http://www.glycome-db.org/showMenu.action?major=database http://www.glycome-db.org/database/showStructure.action?glycomeId=$id 1 metabolite 1 urn:miriam:glycomedb ^\d+$ GlycomeDB |
| | 68 | Gramene Arabidopsis EnAt http://www.gramene.org/ http://www.gramene.org/Arabidopsis_thaliana/Gene/Summary?g=$id ATMG01360-TAIR-G gene 1 EnAt AT[\dCM]G\d{5}\-TAIR\-G |
| | 69 | Gramene Genes DB Gg http://www.gramene.org/ http://www.gramene.org/db/genes/search_gene?acc=$id GR:0060184 gene 1 Gg GR:\d+ |
| | 70 | Gramene Literature Gl http://www.gramene.org/ http://www.gramene.org/db/literature/pub_search?ref_id=$id 6200 probe 0 Gl |
| | 71 | Gramene Maize EnZm http://www.ensembl.org http://www.maizesequence.org/Zea_mays/Gene/Summary?g=$id GRMZM2G174107 gene 1 EnZm |
| | 72 | Gramene Pathway Gp http://www.gramene.org/pathway AAH72400 probe 0 Gp |
| | 73 | Gramene Rice EnOj http://www.gramene.org/ http://www.gramene.org/Oryza_sativa_japonica/Gene/Summary?db=core;g=$id osa-MIR171a gene 1 EnOj |
| | 74 | HGNC H http://www.genenames.org http://www.genenames.org/data/hgnc_data.php?hgnc_id=$id HGNC:2674 gene 1 urn:miriam:hgnc HGNC:\d{1,5} HGNC |
| | 75 | HMDB Ch http://www.hmdb.ca/ http://www.hmdb.ca/metabolites/$id HMDB00001 metabolite 1 urn:miriam:hmdb ^HMDB\d{5}$ HMDB |
| | 76 | HOVERGEN http://pbil.univ-lyon1.fr/databases/hovergen.php http://pbil.univ-lyon1.fr/cgi-bin/acnuc-ac2tree?query=$id&db=HOVERGEN P10000 gene 1 urn:miriam:hovergen ^P\d{5}$ HOVERGEN |
| | 77 | HsGene Hs gene 1 Hs |
| | 78 | ICD http://www.who.int/classifications/icd/en/ http://apps.who.int/classifications/apps/icd/icd10online/index.htm?navi.htm+$id C34 ontology 1 urn:miriam:icd ^[A-Z]\d+(\.[-\d+])?$ ICD |
| | 79 | Illumina Il ILMN_5668 probe 0 Il ILMN_\d+ |
| | 80 | IMEx http://disber.net/imexdrupal/ http://www.ebi.ac.uk/intact/imex/main.xhtml?query=$id IM-12080-80 pathway 1 urn:miriam:imex ^IM-\d+(-?)(\d+?)$ IMEx |
| | 81 | IntAct http://www.ebi.ac.uk/intact/ http://www.ebi.ac.uk/intact/pages/details/details.xhtml?interactionAc=$id EBI-2307691 pathway 1 urn:miriam:intact ^EBI\-[0-9]+$ IntAct |
| | 82 | InterPro I http://www.ebi.ac.uk/interpro/ http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=$id IPR000100 protein 1 urn:miriam:interpro ^IPR\d{6}$ InterPro |
| | 83 | IPI Ip http://www.ebi.ac.uk/IPI http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$id&format=default IPI00000001 probe 1 urn:miriam:ipi ^IPI\d{8}$ IPI |
| | 84 | iRefWeb http://wodaklab.org/iRefWeb/ http://wodaklab.org/iRefWeb/interaction/show/$id 239002 pathway 1 urn:miriam:irefweb ^\d+$ iRefWeb |
| | 85 | IRGSP Gene Ir http://rgp.dna.affrc.go.jp/IRGSP/ Os12g0561000 gene 1 Ir Os\d{2}g\d+ |
| | 86 | ISBN http://isbndb.com/ http://isbndb.com/search-all.html?kw=$id 9781584885658 publication 1 urn:miriam:isbn ^(ISBN)?(-13|-10)?[:]?[ ]?(\d{2,3}[ -]?)?\d{1,5}[ -]?\d{1,7}[ -]?\d{1,6}[ -]?(\d|X)$ ISBN |
| | 87 | JWS http://jjj.biochem.sun.ac.za/index.html http://jjj.biochem.sun.ac.za/cgi-bin/processModelSelection.py?keytype=modelname&keyword=$id curien pathway 1 urn:miriam:jws ^\w+$ JWS |
| | 88 | Kegg Compound Ck http://www.genome.jp/kegg/ligand.html http://www.genome.jp/dbget-bin/www_bget?cpd:$id C12345 metabolite 1 urn:miriam:kegg.compound ^C\d+$ KEGG Compound |
| | 89 | KEGG Drug http://www.genome.jp/kegg/drug/ http://www.genome.jp/dbget-bin/www_bget?dr:$id D00123 metabolite 1 urn:miriam:kegg.drug ^D\d+$ KEGG Drug |
| | 90 | KEGG Genes Kg http://www.genome.jp/kegg/genes.html http://www.genome.jp/dbget-bin/www_bget?$id syn:ssr3451 gene 1 urn:miriam:kegg.genes ^\w+:[\w\d\.-]*$ KEGG Genes |
| | 91 | KEGG Glycan http://www.genome.jp/kegg/glycan/ http://www.genome.jp/dbget-bin/www_bget?gl:$id G00123 metabolite 1 urn:miriam:kegg.glycan ^G\d+$ KEGG Glycan |
| | 92 | KEGG Orthology http://www.genome.jp/kegg/ko.html http://www.genome.jp/dbget-bin/www_bget?ko+$id K00001 protein 1 urn:miriam:kegg.orthology ^K\d+$ KEGG Orthology |
| | 93 | KEGG Pathway http://www.genome.jp/kegg/pathway.html http://www.genome.ad.jp/dbget-bin/www_bget?pathway+$id hsa00620 pathway 1 urn:miriam:kegg.pathway ^\w{2,3}\d{5}$ KEGG Pathway |
| | 94 | KEGG Reaction http://www.genome.jp/kegg/reaction/ http://www.genome.jp/dbget-bin/www_bget?rn:$id R00100 protein 1 urn:miriam:kegg.reaction ^R\d+$ KEGG Reaction |
| | 95 | KiSAO http://bioportal.bioontology.org/ http://bioportal.bioontology.org/visualize/40844/?id=$id KISAO:0000057 ontology 1 urn:miriam:biomodels.kisao ^KISAO:\d+$ KiSAO |
| | 96 | Ligand Expo http://ligand-depot.rutgers.edu/index.html http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$id&operation=ccid ABC protein 1 urn:miriam:ligandexpo ^(\w){3}$ Ligand Expo |
| | 97 | Ligand-Gated Ion Channel database http://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php http://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$id.php 5HT3Arano protein 1 urn:miriam:lgic ^/w+$ Ligand-Gated Ion Channel database |
| | 98 | LipidBank http://lipidbank.jp/index.html http://lipidbank.jp/cgi-bin/detail.cgi?id=$id BBA0001 metabolite 1 urn:miriam:lipidbank ^\w+\d+$ LipidBank |
| | 99 | LIPID MAPS http://www.lipidmaps.org http://www.lipidmaps.org/data/get_lm_lipids_dbgif.php?LM_ID=$id LMFA01030001 metabolite 1 urn:miriam:lipidmaps ^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4})?$ LIPID MAPS |
| | 100 | MACiE http://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/getPage.pl?id=$id M0001 protein 1 urn:miriam:macie ^M\d{4}$ MACiE |
| | 101 | MaizeGDB Mg http://www.maizegdb.org/cgi-bin/displaylocusresults.cgi?term=$id acc1 gene 1 Mg |
| | 102 | MatrixDB http://matrixdb.ibcp.fr/ http://matrixdb.ibcp.fr/cgi-bin/model/report/default?name=$id&class=Association P00747_P07355 pathway 1 urn:miriam:matrixdb.association ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$ MatrixDB |
| | 103 | Melanoma Molecular Map Project Biomaps http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$id 37 pathway 1 urn:miriam:mmmp:biomaps ^\d+$ Melanoma Molecular Map Project Biomaps |
| | 104 | MEROPS http://merops.sanger.ac.uk/index.htm http://merops.sanger.ac.uk/cgi-bin/merops.cgi?id=$id S01.001 protein 1 urn:miriam:merops ^S\d{2}\.\d{3}$ MEROPS |
| | 105 | MGI M http://www.informatics.jax.org/ http://www.informatics.jax.org/searches/accession_report.cgi?id=$id MGI:2442292 gene 1 urn:miriam:mgd ^MGI:\d+$ Mouse Genome Database |
| | 106 | Microbial Protein Interaction Database http://www.jcvi.org/mpidb/about.php http://www.jcvi.org/mpidb/experiment.php?interaction_id=$id 172 pathway 1 urn:miriam:mpid ^\d+$ Microbial Protein Interaction Database |
| | 107 | MINT http://mint.bio.uniroma2.it/mint/ http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$id MINT-10000 pathway 1 urn:miriam:mint ^MINT\-\d{1,5}$ MINT |
| | 108 | miRBase Sequence Mb http://microrna.sanger.ac.uk/ http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?acc=$id MI0000001 gene 1 urn:miriam:mirbase MI\d{7} miRBase Sequence |
| | 109 | MIRIAM Resources http://www.ebi.ac.uk/miriam/ http://www.ebi.ac.uk/miriam/main/$id MIR:00000008 ontology 1 urn:miriam:miriam ^MIR:\d{8}$ MIRIAM Resources |
| | 110 | Molecular Interactions Ontology http://www.ebi.ac.uk/ontology-lookup/ http://www.ebi.ac.uk/ontology-lookup/?termId=$id MI:0308 ontology 1 urn:miriam:obo.mi ^MI:\d{4}$ Molecular Interactions Ontology |
| | 111 | Molecular Modeling Database http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$id 50885 pathway 1 urn:miriam:mmdb ^\d{1,5}$ Molecular Modeling Database |
| | 112 | NASC Gene N ATMG00960-TAIR-G gene 1 N AT[\dCM]G\d{5}\-TAIR\-G |
| | 113 | NeuroLex http://www.neurolex.org/wiki/Main_Page http://www.neurolex.org/wiki/$id Birnlex_721 ontology 1 urn:miriam:neurolex ^(Birnlex_|Sao)\d+$ NeuroLex |
| | 114 | NeuroMorpho http://neuromorpho.org/neuroMorpho/index.jsp http://neuromorpho.org/neuroMorpho/neuron_info.jsp?neuron_name=$id Rosa2 experiment 1 urn:miriam:neuromorpho ^\w+$ NeuroMorpho |
| | 115 | NeuronDB http://senselab.med.yale.edu/NeuronDB/ http://senselab.med.yale.edu/NeuronDB/ndbEavSum.asp?id=$id 265 experiment 1 urn:miriam:neurondb ^\d+$ NeuronDB |
| | 116 | NuGO wiki Nw http://wiki.nugo.org/index.php/$id HMDB00001 metabolite 0 Nw |
| | 117 | OMIM Om http://www.ncbi.nlm.nih.gov/omim/ http://www.ncbi.nlm.nih.gov/omim/$id 603903 gene 1 urn:miriam:omim ^[*#+%^]?\d{6}$ OMIM |
| | 118 | Ontology for Biomedical Investigations http://obi-ontology.org/page/Main_Page http://ashby.csail.mit.edu/cgi-bin/obiterm?ref=$id OBI_0000225 ontology 1 urn:miriam:obo.obi ^OBI_\d{7}$ Ontology for Biomedical Investigations |
| | 119 | Ontology of Physics for Biology http://bioportal.bioontology.org/ http://bioportal.bioontology.org/visualize/42330/?conceptid=OPB:$id OPB_00573 ontology 1 urn:miriam:opb ^OPB\:OPB_\d+$ Ontology of Physics for Biology |
| | 120 | Oryzabase Ob http://www.shigen.nig.ac.jp/rice/oryzabase http://www.shigen.nig.ac.jp/rice/oryzabase/gateway/gatewayAction.do?target=symbol&id=$id 468 gene 1 Ob |
| | 121 | Other O gene 1 O |
| | 122 | PANTHER http://www.pantherdb.org/ http://www.pantherdb.org/panther/family.do?clsAccession=$id PTHR12345 protein 1 urn:miriam:panther ^PTHR\d{5}$ PANTHER |
| | 123 | Pathway Commons http://www.pathwaycommons.org/pc/ http://www.pathwaycommons.org/pc/record2.do?id=$id 50695 pathway 1 urn:miriam:pathwaycommons ^\d+$ Pathway Commons |
| | 124 | PATO http://www.ebi.ac.uk/ontology-lookup/ http://www.ebi.ac.uk/ontology-lookup/?termId=$id PATO:0001998 ontology 1 urn:miriam:obo.pato ^PATO:\d{7}$ PATO |
| | 125 | PDB Pd http://www.pdb.org/ http://www.rcsb.org/pdb/explore/explore.do?structureId=$id 2gc4 protein 1 urn:miriam:pdb ^\w{4}$ Protein Data Bank |
| | 126 | PeptideAtlas http://www.peptideatlas.org/ https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$id PAp00000009 protein 1 urn:miriam:peptideatlas ^PAp[0-9]{8}$ PeptideAtlas |
| | 127 | Pfam Pf http://pfam.sanger.ac.uk/ http://pfam.sanger.ac.uk/family?entry=$id PF01234 protein 1 urn:miriam:pfam ^PF\d{5}$ Pfam |
| | 128 | PharmGKB Disease http://www.pharmgkb.org/ http://www.pharmgkb.org/do/serve?objId=$id&objCls=Disease PA447218 ontology 1 urn:miriam:pharmgkb.disease ^PA\d+$ PharmGKB Disease |
| | 129 | PharmGKB Drug http://www.pharmgkb.org/ http://www.pharmgkb.org/do/serve?objId=$id&objCls=Drug PA448710 metabolite 1 urn:miriam:pharmgkb.drug ^PA\d+$ PharmGKB Drug |
| | 130 | PharmGKB Pathways http://www.pharmgkb.org/ http://www.pharmgkb.org/do/serve?objId=$id&objCls=Pathway PA146123006 pathway 1 urn:miriam:pharmgkb.pathways ^PA\d+$ PharmGKB Pathways |
| | 131 | PhosphoSite Protein http://www.phosphosite.org/homeAction.do http://www.phosphosite.org/proteinAction.do?id=$id 12300 protein 1 urn:miriam:phosphosite.protein ^/d{5}$ PhosphoSite Protein |
| | 132 | PhosphoSite Residue http://www.phosphosite.org/homeAction.do http://www.phosphosite.org/siteAction.do?id=$id 2842 protein 1 urn:miriam:phosphosite.residue ^\d+$ PhosphoSite Residue |
| | 133 | PIRSF http://pir.georgetown.edu/pirsf/ http://pir.georgetown.edu/cgi-bin/ipcSF?id=$id PIRSF000100 protein 1 urn:miriam:pirsf ^PIRSF\d{6}$ PIRSF |
| | 134 | PlantGDB Pl http://www.plantgdb.org/ PUT-157a-Vitis_vinifera-37378 gene 1 Q PUT-[\w\d-]+ |
| | 135 | PRIDE http://www.ebi.ac.uk/pride/ http://www.ebi.ac.uk/pride/experimentLink.do?experimentAccessionNumber=$id 1 protein 1 urn:miriam:pride ^\d+$ PRIDE |
| | 136 | ProDom http://prodom.prabi.fr/prodom/current/html/home.php http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$id PD10000 protein 1 urn:miriam:prodom ^PD\d+$ ProDom |
| | 137 | PROSITE http://www.expasy.org/prosite/ http://www.expasy.org/cgi-bin/nicesite.pl?$id PS00001 protein 1 urn:miriam:prosite ^PS\d{5}$ PROSITE |
| | 138 | Protein Modification Ontology http://www.ebi.ac.uk/ontology-lookup/ http://www.ebi.ac.uk/ontology-lookup/?termId=$id MOD:00001 ontology 1 urn:miriam:obo.psi-mod ^MOD:\d{5} Protein Modification Ontology |
| | 139 | PubChem-bioassay http://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=$id 1018 metabolite 1 urn:miriam:pubchem.bioassay ^\d+$ PubChem-bioassay |
| | 140 | PubChem Cp http://pubchem.ncbi.nlm.nih.gov/ http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?db=pccompound&term=$id 100101 metabolite 1 urn:miriam:pubchem.compound ^\d+$ PubChem-compound |
| | 141 | PubChem-substance http://pubchem.ncbi.nlm.nih.gov/ http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pcsubstance&term=$id 100101 metabolite 1 urn:miriam:pubchem.substance ^\d+$ PubChem-substance |
| | 142 | PubMed http://www.ncbi.nlm.nih.gov/PubMed/ http://www.ncbi.nlm.nih.gov/pubmed/$id 16333295 publication 1 urn:miriam:pubmed ^\d+$ PubMed |
| | 143 | Reactome http://www.reactome.org/ http://www.reactome.org/cgi-bin/eventbrowser_st_id?FROM_REACTOME=1&ST_ID=$id REACT_1590 pathway 1 urn:miriam:reactome ^REACT_\d+(\.\d+)?$ Reactome |
| | 144 | RefSeq Q http://www.ncbi.nlm.nih.gov/projects/RefSeq/ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id NP_012345 gene 1 urn:miriam:refseq ^(NC|AC|NG|NT|NW|NZ|NM|NR|XM|XR|NP|AP|XP|ZP)_\d+$ RefSeq |
| | 145 | Relation Ontology http://www.obofoundry.org/ro/ http://www.obofoundry.org/ro/#$id OBO_REL:is_a ontology 1 urn:miriam:obo.ro ^OBO_REL:\w+\_\w+$ Relation Ontology |
| | 146 | RESID http://www.ebi.ac.uk/RESID/ http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+6JSUg1NA6u4+-e+[RESID:'$id'] AA0001 protein 1 urn:miriam:resid ^AA\d{4}$ RESID |
| | 147 | Rfam Rf http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?$id RF00066 gene 1 Rf RF\d+ |
| | 148 | RGD R http://rgd.mcw.edu/genes/ http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id 2018 gene 1 urn:miriam:rgd ^\d{4,7}$ Rat Genome Database |
| | 149 | Rhea http://www.ebi.ac.uk/rhea/ http://www.ebi.ac.uk/rhea/reaction.xhtml?id=$id 12345 protein 1 urn:miriam:rhea ^\d{5}$ Rhea |
| | 150 | Rice Ensembl Gene Os http://www.gramene.org/Oryza_sativa http://www.gramene.org/Oryza_sativa/geneview?gene=$id LOC_Os04g54800 gene 1 Os |
| | 151 | SABIO-RK EC Record http://sabio.h-its.org/ http://sabio.h-its.org/index2.jsp?EC=$id 2.7.1.1 protein 1 urn:miriam:sabiork.ec ^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$ SABIO-RK EC Record |
| | 152 | SABIO-RK Kinetic Record http://sabio.h-its.org/ http://sabio.h-its.org/kineticLawEntry.jsp?kinlawid=$id 5046 experiment 1 urn:miriam:sabiork.kineticrecord ^\d+$ SABIO-RK Kinetic Record |
| | 153 | SABIO-RK Reaction http://sabio.h-its.org/ http://sabio.h-its.org/index2.jsp?reac=$id 75 protein 1 urn:miriam:sabiork.reaction ^\d+$ SABIO-RK Reaction |
| | 154 | Saccharomyces genome database pathways http://www.yeastgenome.org/biocyc/ http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$id PWY3O-214 pathway 1 urn:miriam:sgd.pathways ^PWY\w{2}\-\d{3}$ Saccharomyces genome database pathways |
| | 155 | sequence ontology http://www.sequenceontology.org/ http://www.sequenceontology.org/miso/current_release/term/$id SO:0000704 ontology 1 urn:miriam:obo.so ^SO:\d{7}$ sequence ontology |
| | 156 | SGD D http://www.yeastgenome.org/ http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=$id S000028457 gene 1 urn:miriam:sgd ^S\d+$ SGD |
| | 157 | Signaling Gateway http://www.signaling-gateway.org/ http://www.signaling-gateway.org/molecule/query?afcsid=$id A001094 protein 1 urn:miriam:signaling-gateway A0\d+ Signaling Gateway |
| | 158 | Small Molecule Pathway Database http://www.smpdb.ca/pathways http://pathman.smpdb.ca/pathways/$id/pathway SMP00001 pathway 1 urn:miriam:smpdb ^SMP\d{5}$ Small Molecule Pathway Database |
| | 159 | SMART http://smart.embl-heidelberg.de/ http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$id SM00015 protein 1 urn:miriam:smart ^SM\d{5}$ SMART |
| | 160 | SPRINT http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/ http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$id&display_opts=Prints&category=None&queryform=false®expr=off PR00001 protein 1 urn:miriam:sprint ^PR\d{5}$ SPRINT |
| | 161 | Systems Biology Ontology http://www.ebi.ac.uk/sbo/ http://www.ebi.ac.uk/sbo/main/$id SBO:0000262 ontology 1 urn:miriam:obo.sbo ^SBO:\d{7}$ Systems Biology Ontology |
| | 162 | T3DB http://www.t3db.org/ http://www.t3db.org/toxins/$id T3D0001 metabolite 1 urn:miriam:t3db ^T3D\d+$ T3DB |
| | 163 | TAIR A http://arabidopsis.org/index.jsp http://arabidopsis.org/servlets/TairObject?type=locus&name=$id AT1G01030 gene 1 urn:miriam:tair.locus ^AT[1-5]G\d{5}$ TAIR Locus |
| | 164 | TAIR Gene http://arabidopsis.org/index.jsp http://arabidopsis.org/servlets/TairObject?accession=$id Gene:2200934 gene 1 urn:miriam:tair.gene ^Gene:\d{7}$ TAIR Gene |
| | 165 | TAIR Protein http://arabidopsis.org/index.jsp http://arabidopsis.org/servlets/TairObject?accession=$id AASequence:1009107926 protein 1 urn:miriam:tair.protein ^AASequence:\d{10}$ TAIR Protein |
| | 166 | Taxonomy http://www.ncbi.nlm.nih.gov/Taxonomy/ http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$id 9606 organism 1 urn:miriam:taxonomy ^\d+$ Taxonomy |
| | 167 | TEDDY http://teddyontology.sourceforge.net/ http://bioportal.bioontology.org/visualize/40985/?id=teddy%3A$id TEDDY_0000050 ontology 1 urn:miriam:biomodels.teddy ^TEDDY_\d{7}$ TEDDY |
| | 168 | TIGR Ti http://www.jcvi.org/ 12012.t00308 gene 1 Ti |
| | 169 | Transport Classification Database http://www.tcdb.org/ http://www.tcdb.org/search/result.php?tc=$id 5.A.1.1.1 protein 1 urn:miriam:tcdb ^\d+\.[A-Z]\.\d+\.\d+\.\d+$ Transport Classification Database |
| | 170 | TTD Drug http://bidd.nus.edu.sg/group/cjttd/TTD_HOME.asp http://bidd.nus.edu.sg/group/cjttd/ZFTTDDRUG.asp?ID=$id DAP000773 metabolite 1 urn:miriam:ttd.drug ^DAP\d+$ TTD Drug |
| | 171 | TTD Target http://bidd.nus.edu.sg/group/cjttd/TTD_HOME.asp http://bidd.nus.edu.sg/group/cjttd/ZFTTDDetail.asp?ID=$id TTDS00056 protein 1 urn:miriam:ttd.target ^TTDS\d+$ TTD Target |
| | 172 | UCSC Genome Browser Uc http://genome.ucsc.edu/ http://genome.ucsc.edu/cgi-bin/hgTracks?position=$id uc001tyh.1 gene 1 Uc uc\d{3}[a-z]{3}\.\d |
| | 173 | UniGene U http://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=1548618&SEARCH=$id Hs.553708 gene 1 U [A-Z][a-z][a-z]?\.\d+ |
| | 174 | UniParc http://www.ebi.ac.uk/uniparc/ http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$id UPI000000000A protein 1 urn:miriam:uniparc ^UPI[A-F0-9]{10}$ UniParc |
| | 175 | Unipathway http://www.grenoble.prabi.fr/obiwarehouse/unipathway http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$id UPA00206 pathway 1 urn:miriam:unipathway ^UPA\d{5}$ Unipathway |
| | 176 | Uniprot/TrEMBL S http://www.ebi.uniprot.org/ http://www.ebi.uniprot.org/entry/$id P62158 protein 1 urn:miriam:uniprot ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ UniProt |
| | 177 | Wheat gene catalog Wc http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/sql?sql=select+distinct+genewgcreference.number+as+WGC,+reference.name+as+Reference,+reference.title+as+Title,+journal.name+as+Journal,+reference.volume+as+Volume,+reference.pages+as+Page+from+reference+inner+join+genewgcreference+on+genewgcreference.referenceid=reference.id+inner+join+journal+on+reference.journalid=journal.id+where+genewgcreference.number=$id 341 gene 1 Wc |
| | 178 | Wheat gene names Wn http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/report?class=gene;name=$id 5S-Rrna-D1_(Triticum) gene 1 Wn |
| | 179 | Wheat gene refs Wr http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/cgi-bin/graingenes/report.cgi?class=reference&name=$id WGS-95-1333 probe 0 Wr |
| | 180 | WikiPathways Wp http://www.wikipathways.org/ http://www.wikipathways.org/index.php/Pathway:$id WP100 pathway 1 urn:miriam:wikipathways WP\d{1,5} WikiPathways |
| | 181 | Wikipedia Wi http://www.wikipedia.org http://en.wikipedia.org/wiki/$id Acetate metabolite 1 Wi |
| | 182 | WormBase W http://www.wormbase.org/ http://www.wormbase.org/db/gene/gene?name=$id;class=Gene WBGene00000001 gene 1 urn:miriam:wormbase ^WBGene\d{8}$ WormBase |
| | 183 | Wormpep http://www.wormbase.org/db/seq/protein http://www.wormbase.org/db/seq/protein?name=$id CE28239 protein 1 urn:miriam:wormpep ^CE\d{5}$ Wormpep |
| | 184 | ZFIN Z http://zfin.org http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=$id ZDB-GENE-041118-11 gene 1 urn:miriam:zfin ZDB\-GENE\-\d+\-\d+ ZFIN Gene |
