Changeset 398

Timestamp:

06/03/10 01:59:11 (20 months ago)

Author:

AlexanderPico

Message:

updating HUGO

Location:

trunk/org.bridgedb.bio

Files:

• resources/org/bridgedb/bio/datasources.txt (modified) (1 diff)
• src/org/bridgedb/bio/BioDataSource.java (modified) (2 diffs)

trunk/org.bridgedb.bio/resources/org/bridgedb/bio/datasources.txt

@@ -43 +43 @@
 GenPept Gp                      AAH72400        probe           0       Gp
 Gramene Pathway Gp      http://www.gramene.org/pathway          PROTEIN-KINASE-RXN      probe           0       Gp
-HUGO    H       http://www.genenames.org/       http://www.genenames.org/data/hgnc_data.php?hgnc_id=$ID 25068   gene    Homo sapiens    1       urn:miriam:hgnc
+HGNC    H       http://www.genenames.org/       http://www.genenames.org/data/hgnc_data.php?match=$ID   25068   gene    Homo sapiens    1       urn:miriam:hgnc
 HsGene  Hs                              gene    Homo sapiens    1       Hs
 InterPro        I       http://www.ebi.ac.uk/interpro   http://www.ebi.ac.uk/interpro/IEntry?ac=$ID             domain          0       urn:miriam:interpro

trunk/org.bridgedb.bio/src/org/bridgedb/bio/BioDataSource.java

@@ -124 +124 @@
                 "Gw", "GeneWiki").asDataSource(); 
         public static final DataSource HUGO = DataSource.register (
-                "H", "HUGO").asDataSource();
+                "H", "HGNC").asDataSource();
         public static final DataSource HSGENE = DataSource.register (
                 "Hs", "HsGene").asDataSource();
@@ -401 +401 @@
                 DataSourcePatterns.registerPattern(
                                 BioDataSource.HUGO,
-                                Pattern.compile("\\d+")
+                                Pattern.compile("[A-Z][A-Z,0-9]+")
                 );