Changeset 378 for trunk/org.bridgedb.bio/src/org/bridgedb/bio/BioDataSource.java

Timestamp:

05/31/10 22:44:54 (2 years ago)

Author:

AlexanderPico

Message:

adding Mtuberculosis

Files:

• trunk/org.bridgedb.bio/src/org/bridgedb/bio/BioDataSource.java (modified) (3 diffs)

trunk/org.bridgedb.bio/src/org/bridgedb/bio/BioDataSource.java

@@ -93 +93 @@
         public static final DataSource ENSEMBL_MOUSE = DataSource.register (
                 "EnMm", "Ensembl Mouse").asDataSource();
+        public static final DataSource ENSEMBL_MTUBERCULOSIS = DataSource.register (
+                "EnMx", "Ensembl M. tuberculosis").asDataSource();
         public static final DataSource GRAMENE_RICE = DataSource.register (
                 "EnOj", "Gramene Rice").asDataSource();
@@ -350 +352 @@
                                 Pattern.compile("ENSDARG\\d{11}")
                 );
+                DataSourcePatterns.registerPattern(
+                                BioDataSource.ENSEMBL_MTUBERCULOSIS,
+                                Pattern.compile("EBMYCG\\d{11}")
+                );
                 DataSourcePatterns.registerPattern(
                                 BioDataSource.ENSEMBL_FRUITFLY, 
@@ -464 +470 @@
                 ensemblBySpecies.put (Organism.XenopusTropicalis, ENSEMBL_XENOPUS);
                 ensemblBySpecies.put (Organism.DanioRerio, ENSEMBL_ZEBRAFISH);          
+                ensemblBySpecies.put (Organism.MycobacteriumTuberculosis, ENSEMBL_MTUBERCULOSIS);
         }