Changeset 378

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Timestamp:
05/31/10 22:44:54 (20 months ago)
Author:
AlexanderPico
Message:

adding Mtuberculosis

Location:
trunk/org.bridgedb.bio/src/org/bridgedb/bio
Files:
2 modified

Legend:

Unmodified
Added
Removed

  • trunk/org.bridgedb.bio/src/org/bridgedb/bio/BioDataSource.java

    r367 r378  
    9393        public static final DataSource ENSEMBL_MOUSE = DataSource.register ( 
    9494                "EnMm", "Ensembl Mouse").asDataSource(); 
     95        public static final DataSource ENSEMBL_MTUBERCULOSIS = DataSource.register ( 
     96                "EnMx", "Ensembl M. tuberculosis").asDataSource(); 
    9597        public static final DataSource GRAMENE_RICE = DataSource.register ( 
    9698                "EnOj", "Gramene Rice").asDataSource(); 
    … …  
    350352                                Pattern.compile("ENSDARG\\d{11}") 
    351353                ); 
     354                DataSourcePatterns.registerPattern( 
     355                                BioDataSource.ENSEMBL_MTUBERCULOSIS, 
     356                                Pattern.compile("EBMYCG\\d{11}") 
     357                ); 
    352358                DataSourcePatterns.registerPattern( 
    353359                                BioDataSource.ENSEMBL_FRUITFLY,  
    … …  
    464470                ensemblBySpecies.put (Organism.XenopusTropicalis, ENSEMBL_XENOPUS); 
    465471                ensemblBySpecies.put (Organism.DanioRerio, ENSEMBL_ZEBRAFISH);           
     472                ensemblBySpecies.put (Organism.MycobacteriumTuberculosis, ENSEMBL_MTUBERCULOSIS); 
    466473        } 
    467474         

  • trunk/org.bridgedb.bio/src/org/bridgedb/bio/Organism.java

    r363 r378  
    5454        MusMusculus("Mus musculus", "Mm", "Mouse"), 
    5555        MonodelphisDomestica  ("Monodelphis domestica", "Md", "Opossum"), 
     56        MycobacteriumTuberculosis ("Mycobacterium tuberculosis", "Mx", "Tuberculosis"), 
    5657        OrnithorhynchusAnatinus ("Ornithorhynchus anatinus", "Oa", "Platypus"), 
    5758        OryzaSativa("Oryza sativa", "Os", "Rice"),