Changeset 352

Timestamp:

05/15/10 20:10:49 (21 months ago)

Author:

AlexanderPico

Message:

updating specification of home directory for use on plato

Files:

• trunk/dbbuilder/src/org/bridgedb/extract/Ensembl_ETL_Device_v18_local.pl (modified) (5 diffs)

trunk/dbbuilder/src/org/bridgedb/extract/Ensembl_ETL_Device_v18_local.pl

@@ -40 +40 @@
 use DBI;
 use HashSpeciesList;
-use lib '/home/apico/src/ensembl/modules';
-use lib '/home/apico/src/ensembl-compara/modules';
-use lib '/home/apico/src/ensembl-variation/modules';
-use lib '/home/apico/src/ensembl-functgenomics/modules';
-use lib '/home/apico/bioperl-live'; 
+use lib '/home/socr/c/users2/apico/src/ensembl/modules';
+use lib '/home/socr/c/users2/apico/src/ensembl-compara/modules';
+use lib '/home/socr/c/users2/apico/src/ensembl-variation/modules';
+use lib '/home/socr/c/users2/apico/src/ensembl-functgenomics/modules';
+use lib '/home/socr/c/users2/apico/bioperl-live'; 
 use Bio::EnsEMBL::Registry;
 use Bio::EnsEMBL::DBSQL::DBConnection;
@@ -51 +51 @@
 use Bio::EnsEMBL::OntologyTerm;
 use Bio::EnsEMBL::Funcgen::ProbeFeature;
-my $api_path = "/home/apico/src/ensembl/modules";
+my $api_path = "/home/socr/c/users2/apico/src/ensembl/modules";
 
 ## Under script control
@@ -133 +133 @@
  Simply copy and paste the following command line statements:
 
-  1) cd /home/apico/src/
+  1) cd /home/socr/c/users2/apico/src/
   2) cvs -d :pserver:cvsuser\@cvs.sanger.ac.uk:/cvsroot/ensembl  login
      password: CVSUSER  (yes, in all caps)
@@ -146 +146 @@
         to allow for performance enhancement by slice_adaptor->fetch_all(toplevel)
  These steps will update the local copy of the Ensembl API by overwriting the
- folder /home/apico/src/ensembl/ and /home/apico/src/ensembl-compara.
+ folder /home/socr/c/users2/apico/src/ensembl/ and /home/socr/c/users2/apico/src/ensembl-compara.
 
  Update the list of species by editing the file 'SpeciesList' which is read-in
@@ -1450 +1450 @@
 my $new_cs = $twoLetterSpecies."_CS_".$dateArg;
 my $sqlPass = "fun4genmapp";
-my $bkupDir = "/home/apico/EnsemblAPI/DB_Copies/";
+my $bkupDir = "/home/socr/c/users2/apico/EnsemblAPI/DB_Copies/";
 my $mysqldump_cmd = "mysqldump -u genmapp --password=".$sqlPass;
 my $mysql_cmd = "mysql -u genmapp --password=".$sqlPass;