Changeset 351 for trunk/dbbuilder/src/org/bridgedb/download/ensembl_download.sh

Timestamp:

05/15/10 20:07:46 (2 years ago)

Author:

AlexanderPico

Message:

updated bacteria script and substituted use of tmp dir

Files:

• trunk/dbbuilder/src/org/bridgedb/download/ensembl_download.sh (modified) (1 diff)

trunk/dbbuilder/src/org/bridgedb/download/ensembl_download.sh

@@ -44 +44 @@
    cd ./${mysql_go_name}; for table_name in *.txt
    do
-    #import data
-    cp $table_name /tmp/
-    
-    ${mysqlimport} -u genmapp -pfun4genmapp genmapp_${mysql_go_name} /tmp/${table_name}
-    
-    rm /tmp/${table_name}
+    ${mysqlimport} -u genmapp -pfun4genmapp genmapp_${mysql_go_name} `pwd`/${table_name}
   done
  )