Changeset 308

Timestamp:

02/23/10 15:28:52 (2 years ago)

Author:

martijn

Message:

Big project Reogranization:
- all modules are named with their main package name,

e.g. "picr" becomes org.bridgedb.webservice.picr,
and the jar will be org.bridgedb.webservice.picr.jar

- webservice renamed to org.bridgedb.server
- corelib is split in org.bridgedb, org.bridgedb.rdb,

org.bridgedb.webservice.biomart and org.bridgedb.webservice.bridgerest

Location:

trunk

Files:

• benchmarking/build.xml (modified) (view diffs)
• benchmarking/src/org/bridgedb/benchmarking/ComparisonScript.java (modified) (view diffs)
• bio/test/org/bridgedb/bio/Test.java (deleted)
• build.xml (modified) (view diffs)
• org.bridgedb (added)
• org.bridgedb.bio (added)
• org.bridgedb.bio/build.xml (moved) (moved from trunk/bio/build.xml) (view diffs)
• org.bridgedb.bio/src (added)
• org.bridgedb.bio/src/org (added)
• org.bridgedb.bio/src/org/bridgedb (added)
• org.bridgedb.bio/src/org/bridgedb/bio (added)
• org.bridgedb.bio/src/org/bridgedb/bio/BioDataSource.java (moved) (moved from trunk/bio/src/org/bridgedb/bio/BioDataSource.java) (view diffs)
• org.bridgedb.bio/src/org/bridgedb/bio/Organism.java (moved) (moved from trunk/bio/src/org/bridgedb/bio/Organism.java) (view diffs)
• org.bridgedb.bio/src/org/bridgedb/bio/package.html (moved) (moved from trunk/bio/src/org/bridgedb/bio/package.html) (view diffs)
• org.bridgedb.bio/test (added)
• org.bridgedb.bio/test/org (added)
• org.bridgedb.bio/test/org/bridgedb (added)
• org.bridgedb.bio/test/org/bridgedb/bio (added)
• org.bridgedb.bio/test/org/bridgedb/bio/Test.java (added)
• org.bridgedb.bio/test/org/bridgedb/bio/TestStack.java (moved) (moved from trunk/bio/test/org/bridgedb/bio/TestStack.java) (view diffs)
• org.bridgedb.rdb (added)
• org.bridgedb.rdb/build-lib (added)
• org.bridgedb.rdb/build-lib/derbyclient.jar (moved) (moved from trunk/corelib/build-lib/derbyclient.jar) (view diffs)
• org.bridgedb.rdb/build.xml (copied) (copied from trunk/picr/build.xml) (view diffs)
• org.bridgedb.rdb/lib (added)
• org.bridgedb.rdb/lib/derby.jar (moved) (moved from trunk/corelib/lib/derby.jar) (view diffs)
• org.bridgedb.rdb/src (added)
• org.bridgedb.rdb/src/org (added)
• org.bridgedb.rdb/src/org/bridgedb (added)
• org.bridgedb.rdb/src/org/bridgedb/rdb (added)
• org.bridgedb.rdb/src/org/bridgedb/rdb/DBConnector.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/DBConnector.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/DBConnectorDerbyServer.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/DBConnectorDerbyServer.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/DataDerby.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/DataDerby.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/DataDerbyDirectory.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/DataDerbyDirectory.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/DataHsqldb.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/DataHsqldb.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/FileUtilsGdb.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/FileUtilsGdb.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/GdbConstruct.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/GdbConstruct.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/GdbProvider.java (moved) (moved from trunk/bio/src/org/bridgedb/bio/GdbProvider.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/IDMapperRdb.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/IDMapperRdb.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/SimpleGdb.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/SimpleGdb.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/SimpleGdbFactory.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/SimpleGdbFactory.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/SimpleGdbImpl2.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/SimpleGdbImpl2.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/SimpleGdbImpl3.java (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/SimpleGdbImpl3.java) (view diffs)
• org.bridgedb.rdb/src/org/bridgedb/rdb/package.html (moved) (moved from trunk/corelib/src/org/bridgedb/rdb/package.html) (view diffs)
• org.bridgedb.rdb/test (added)
• org.bridgedb.rdb/test/org (added)
• org.bridgedb.rdb/test/org/bridgedb (added)
• org.bridgedb.rdb/test/org/bridgedb/rdb (added)
• org.bridgedb.rdb/test/org/bridgedb/rdb/Test.java (moved) (moved from trunk/corelib/test/org/bridgedb/rdb/Test.java) (view diffs)
• org.bridgedb.rdb/test/org/bridgedb/rdb/Test2.java (moved) (moved from trunk/corelib/test/org/bridgedb/Test.java) (view diffs)
• org.bridgedb.rdb/test/org/bridgedb/rdb/TestJdbc.java (added)
• org.bridgedb.server (added)
• org.bridgedb.server/build.xml (moved) (moved from trunk/webservice/build.xml) (view diffs)
• org.bridgedb.server/contrib (added)
• org.bridgedb.server/contrib/bridgedb-example.R (moved) (moved from trunk/webservice/contrib/bridgedb-example.R) (view diffs)
• org.bridgedb.server/contrib/bridgedb-example.php (moved) (moved from trunk/webservice/contrib/bridgedb-example.php) (view diffs)
• org.bridgedb.server/contrib/bridgedb-example.pl (moved) (moved from trunk/webservice/contrib/bridgedb-example.pl) (view diffs)
• org.bridgedb.server/contrib/bridgedb-example.py (moved) (moved from trunk/webservice/contrib/bridgedb-example.py) (view diffs)
• org.bridgedb.server/gdb.config.template (moved) (moved from trunk/webservice/gdb.config.template) (view diffs)
• org.bridgedb.server/lib (added)
• org.bridgedb.server/lib/mysql-connector-java-5.1.7-bin.jar (moved) (moved from trunk/webservice/lib/mysql-connector-java-5.1.7-bin.jar) (view diffs)
• org.bridgedb.server/lib/restlet-2.0m6 (added)
• org.bridgedb.server/lib/restlet-2.0m6/org.restlet.ext.servlet.jar (moved) (moved from trunk/webservice/lib/restlet-2.0m6/org.restlet.ext.servlet.jar) (view diffs)
• org.bridgedb.server/lib/restlet-2.0m6/org.restlet.jar (moved) (moved from trunk/webservice/lib/restlet-2.0m6/org.restlet.jar) (view diffs)
• org.bridgedb.server/src (added)
• org.bridgedb.server/src/org (added)
• org.bridgedb.server/src/org/bridgedb (added)
• org.bridgedb.server/src/org/bridgedb/cgi-bin (added)
• org.bridgedb.server/src/org/bridgedb/cgi-bin/idLookupCGI.pl (moved) (moved from trunk/webservice/src/org/bridgedb/cgi-bin/idLookupCGI.pl) (view diffs)
• org.bridgedb.server/src/org/bridgedb/html (added)
• org.bridgedb.server/src/org/bridgedb/html/idlookup.html (moved) (moved from trunk/webservice/src/org/bridgedb/html/idlookup.html) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server (added)
• org.bridgedb.server/src/org/bridgedb/server/AttributeSearch.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/AttributeSearch.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/AttributeSet.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/AttributeSet.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/Attributes.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/Attributes.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/BackPageText.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/BackPageText.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/Config.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/Config.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/FreeSearch.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/FreeSearch.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/IDMapperResource.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/IDMapperResource.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/IDMapperService.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/IDMapperService.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/IsFreeSearchSupported.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/IsFreeSearchSupported.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/IsMappingSupported.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/IsMappingSupported.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/NoMatch.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/NoMatch.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/Properties.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/Properties.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/Server.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/Server.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/SupportedSourceDataSources.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/SupportedSourceDataSources.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/SupportedTargetDataSources.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/SupportedTargetDataSources.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/XrefExists.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/XrefExists.java) (view diffs)
• org.bridgedb.server/src/org/bridgedb/server/Xrefs.java (moved) (moved from trunk/webservice/src/org/bridgedb/rest/Xrefs.java) (view diffs)
• org.bridgedb.server/test (added)
• org.bridgedb.server/test/org (added)
• org.bridgedb.server/test/org/bridgedb (added)
• org.bridgedb.server/test/org/bridgedb/server (added)
• org.bridgedb.server/test/org/bridgedb/server/Test.java (moved) (moved from trunk/webservice/test/org/bridgedb/rest/Test.java) (view diffs)
• org.bridgedb.server/web.xml (moved) (moved from trunk/webservice/web.xml) (view diffs)
• org.bridgedb.tools.batchmapper (added)
• org.bridgedb.tools.batchmapper/build.xml (moved) (moved from trunk/batchmapper/build.xml) (view diffs)
• org.bridgedb.tools.batchmapper/src (added)
• org.bridgedb.tools.batchmapper/src/org (added)
• org.bridgedb.tools.batchmapper/src/org/bridgedb (added)
• org.bridgedb.tools.batchmapper/src/org/bridgedb/tools (added)
• org.bridgedb.tools.batchmapper/src/org/bridgedb/tools/batchmapper (added)
• org.bridgedb.tools.batchmapper/src/org/bridgedb/tools/batchmapper/BatchMapper.java (moved) (moved from trunk/batchmapper/src/org/bridgedb/tools/BatchMapper.java) (view diffs)
• org.bridgedb.tools.batchmapper/src/org/bridgedb/tools/batchmapper/Lookup.java (moved) (moved from trunk/batchmapper/src/org/bridgedb/tools/Lookup.java) (view diffs)
• org.bridgedb.webservice.biomart (added)
• org.bridgedb.webservice.biomart/build.xml (moved) (moved from trunk/corelib/build.xml) (view diffs)
• org.bridgedb.webservice.biomart/src (added)
• org.bridgedb.webservice.biomart/src/org (added)
• org.bridgedb.webservice.biomart/src/org/bridgedb (added)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice (added)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart (added)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/BiomartStub.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/BiomartStub.java) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/IDMapperBiomart.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/IDMapperBiomart.java) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/package.html (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/package.html) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/util (added)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/util/Attribute.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/util/Attribute.java) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/util/BiomartClient.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/util/BiomartClient.java) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/util/Database.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/util/Database.java) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/util/Dataset.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/util/Dataset.java) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/util/Filter.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/util/Filter.java) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/util/XMLQueryBuilder.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/util/XMLQueryBuilder.java) (view diffs)
• org.bridgedb.webservice.biomart/src/org/bridgedb/webservice/biomart/util/filterconversion.txt (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/biomart/util/filterconversion.txt) (view diffs)
• org.bridgedb.webservice.biomart/test (added)
• org.bridgedb.webservice.biomart/test/org (added)
• org.bridgedb.webservice.biomart/test/org/bridgedb (added)
• org.bridgedb.webservice.biomart/test/org/bridgedb/webservice (added)
• org.bridgedb.webservice.biomart/test/org/bridgedb/webservice/biomart (added)
• org.bridgedb.webservice.biomart/test/org/bridgedb/webservice/biomart/TestBiomart.java (moved) (moved from trunk/corelib/test/org/bridgedb/TestBiomart.java) (view diffs)
• org.bridgedb.webservice.bridgerest (added)
• org.bridgedb.webservice.bridgerest/build.xml (added)
• org.bridgedb.webservice.bridgerest/src (added)
• org.bridgedb.webservice.bridgerest/src/org (added)
• org.bridgedb.webservice.bridgerest/src/org/bridgedb (added)
• org.bridgedb.webservice.bridgerest/src/org/bridgedb/webservice (added)
• org.bridgedb.webservice.bridgerest/src/org/bridgedb/webservice/bridgerest (added)
• org.bridgedb.webservice.bridgerest/src/org/bridgedb/webservice/bridgerest/BridgeRest.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/bridgerest/BridgeRest.java) (view diffs)
• org.bridgedb.webservice.cronos (added)
• org.bridgedb.webservice.cronos/WSREADME.txt (moved) (moved from trunk/cronos/WSREADME.txt) (view diffs)
• org.bridgedb.webservice.cronos/build.xml (moved) (moved from trunk/cronos/build.xml) (view diffs)
• org.bridgedb.webservice.cronos/lib (added)
• org.bridgedb.webservice.cronos/lib/axis-1_4 (added)
• org.bridgedb.webservice.cronos/lib/axis-1_4/LICENSE (moved) (moved from trunk/cronos/lib/axis-1_4/LICENSE) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/NOTICE (moved) (moved from trunk/cronos/lib/axis-1_4/NOTICE) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib (added)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/axis-ant.jar (moved) (moved from trunk/cronos/lib/axis-1_4/lib/axis-ant.jar) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/axis.jar (moved) (moved from trunk/cronos/lib/axis-1_4/lib/axis.jar) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/commons-discovery-0.2.jar (moved) (moved from trunk/cronos/lib/axis-1_4/lib/commons-discovery-0.2.jar) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/commons-logging-1.0.4.jar (moved) (moved from trunk/cronos/lib/axis-1_4/lib/commons-logging-1.0.4.jar) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/jaxrpc.jar (moved) (moved from trunk/cronos/lib/axis-1_4/lib/jaxrpc.jar) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/log4j-1.2.8.jar (moved) (moved from trunk/cronos/lib/axis-1_4/lib/log4j-1.2.8.jar) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/log4j.properties (moved) (moved from trunk/cronos/lib/axis-1_4/lib/log4j.properties) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/saaj.jar (moved) (moved from trunk/cronos/lib/axis-1_4/lib/saaj.jar) (view diffs)
• org.bridgedb.webservice.cronos/lib/axis-1_4/lib/wsdl4j-1.5.1.jar (moved) (moved from trunk/cronos/lib/axis-1_4/lib/wsdl4j-1.5.1.jar) (view diffs)
• org.bridgedb.webservice.cronos/src (added)
• org.bridgedb.webservice.cronos/src/org (added)
• org.bridgedb.webservice.cronos/src/org/bridgedb (added)
• org.bridgedb.webservice.cronos/src/org/bridgedb/webservice (added)
• org.bridgedb.webservice.cronos/src/org/bridgedb/webservice/cronos (added)
• org.bridgedb.webservice.cronos/src/org/bridgedb/webservice/cronos/IDMapperCronos.java (moved) (moved from trunk/cronos/src/org/bridgedb/webservice/cronos/IDMapperCronos.java) (view diffs)
• org.bridgedb.webservice.cronos/test (added)
• org.bridgedb.webservice.cronos/test/org (added)
• org.bridgedb.webservice.cronos/test/org/bridgedb (added)
• org.bridgedb.webservice.cronos/test/org/bridgedb/webservice (added)
• org.bridgedb.webservice.cronos/test/org/bridgedb/webservice/cronos (added)
• org.bridgedb.webservice.cronos/test/org/bridgedb/webservice/cronos/Test.java (moved) (moved from trunk/cronos/test/org/bridgedb/webservice/cronos/Test.java) (view diffs)
• org.bridgedb.webservice.picr (added)
• org.bridgedb.webservice.picr/build.xml (moved) (moved from trunk/picr/build.xml) (view diffs)
• org.bridgedb.webservice.picr/lib (added)
• org.bridgedb.webservice.picr/lib/activation-1.1.jar (moved) (moved from trunk/picr/lib/activation-1.1.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/commons-collections-3.2.jar (moved) (moved from trunk/picr/lib/commons-collections-3.2.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jaxb-api-2.1.jar (moved) (moved from trunk/picr/lib/jaxb-api-2.1.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jaxb-impl-2.1.2.jar (moved) (moved from trunk/picr/lib/jaxb-impl-2.1.2.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jaxb-xjc-2.1.2.jar (moved) (moved from trunk/picr/lib/jaxb-xjc-2.1.2.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jaxws-api-2.1.jar (moved) (moved from trunk/picr/lib/jaxws-api-2.1.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jaxws-rt-2.1.jar (moved) (moved from trunk/picr/lib/jaxws-rt-2.1.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jaxws-tools-2.1.jar (moved) (moved from trunk/picr/lib/jaxws-tools-2.1.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jsr173_api-1.0.jar (moved) (moved from trunk/picr/lib/jsr173_api-1.0.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jsr181-api-1.0-MR1.jar (moved) (moved from trunk/picr/lib/jsr181-api-1.0-MR1.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/jsr250-api-1.0.jar (moved) (moved from trunk/picr/lib/jsr250-api-1.0.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/resolver.jar (moved) (moved from trunk/picr/lib/resolver.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/saaj-api-1.3.jar (moved) (moved from trunk/picr/lib/saaj-api-1.3.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/saaj-impl-1.3.2.jar (moved) (moved from trunk/picr/lib/saaj-impl-1.3.2.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/sjsxp-SNAPSHOT.jar (moved) (moved from trunk/picr/lib/sjsxp-SNAPSHOT.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/stax-api-1.0.jar (moved) (moved from trunk/picr/lib/stax-api-1.0.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/stax-ex-1.0.jar (moved) (moved from trunk/picr/lib/stax-ex-1.0.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/streambuffer-0.4.jar (moved) (moved from trunk/picr/lib/streambuffer-0.4.jar) (view diffs)
• org.bridgedb.webservice.picr/lib/xfire-jsr181-api-1.0-M1.jar (moved) (moved from trunk/picr/lib/xfire-jsr181-api-1.0-M1.jar) (view diffs)
• org.bridgedb.webservice.picr/src (added)
• org.bridgedb.webservice.picr/src/org (added)
• org.bridgedb.webservice.picr/src/org/bridgedb (added)
• org.bridgedb.webservice.picr/src/org/bridgedb/webservice (added)
• org.bridgedb.webservice.picr/src/org/bridgedb/webservice/picr (added)
• org.bridgedb.webservice.picr/src/org/bridgedb/webservice/picr/IDMapperPicr.java (moved) (moved from trunk/picr/src/org/bridgedb/webservice/picr/IDMapperPicr.java) (view diffs)
• org.bridgedb.webservice.picr/src/org/bridgedb/webservice/picr/IDMapperPicrRest.java (moved) (moved from trunk/picr/src/org/bridgedb/webservice/picr/IDMapperPicrRest.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk (added)
• org.bridgedb.webservice.picr/src/uk/ac (added)
• org.bridgedb.webservice.picr/src/uk/ac/ebi (added)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo (added)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr (added)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/business (added)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/business/PICRClient.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/business/PICRClient.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap (added)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/AccessionMapperInterface.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/AccessionMapperInterface.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/AccessionMapperService.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/AccessionMapperService.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/CrossReference.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/CrossReference.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/GetMappedDatabaseNames.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/GetMappedDatabaseNames.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/GetMappedDatabaseNamesResponse.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/GetMappedDatabaseNamesResponse.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/GetUPIForAccession.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/GetUPIForAccession.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/GetUPIForAccessionResponse.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/GetUPIForAccessionResponse.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/GetUPIForSequence.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/GetUPIForSequence.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/GetUPIForSequenceResponse.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/GetUPIForSequenceResponse.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/ObjectFactory.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/ObjectFactory.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/UPEntry.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/UPEntry.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/soap/package-info.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/soap/package-info.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/swing (added)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/swing/PICRAccessionDemo.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/swing/PICRAccessionDemo.java) (view diffs)
• org.bridgedb.webservice.picr/src/uk/ac/ebi/demo/picr/swing/PICRSequenceDemo.java (moved) (moved from trunk/picr/src/uk/ac/ebi/demo/picr/swing/PICRSequenceDemo.java) (view diffs)
• org.bridgedb.webservice.picr/test (added)
• org.bridgedb.webservice.picr/test/org (added)
• org.bridgedb.webservice.picr/test/org/bridgedb (added)
• org.bridgedb.webservice.picr/test/org/bridgedb/webservice (added)
• org.bridgedb.webservice.picr/test/org/bridgedb/webservice/picr (added)
• org.bridgedb.webservice.picr/test/org/bridgedb/webservice/picr/Test.java (moved) (moved from trunk/picr/test/org/bridgedb/webservice/picr/Test.java) (view diffs)
• org.bridgedb.webservice.picr/test/org/bridgedb/webservice/picr/TestRest.java (moved) (moved from trunk/picr/test/org/bridgedb/webservice/picr/TestRest.java) (view diffs)
• org.bridgedb.webservice.synergizer (added)
• org.bridgedb.webservice.synergizer/build.xml (moved) (moved from trunk/synergizer/build.xml) (view diffs)
• org.bridgedb.webservice.synergizer/lib (added)
• org.bridgedb.webservice.synergizer/lib/synergizer-client.jar (moved) (moved from trunk/synergizer/lib/synergizer-client.jar) (view diffs)
• org.bridgedb.webservice.synergizer/src (added)
• org.bridgedb.webservice.synergizer/src/org (added)
• org.bridgedb.webservice.synergizer/src/org/bridgedb (added)
• org.bridgedb.webservice.synergizer/src/org/bridgedb/webservice (added)
• org.bridgedb.webservice.synergizer/src/org/bridgedb/webservice/synergizer (added)
• org.bridgedb.webservice.synergizer/src/org/bridgedb/webservice/synergizer/IDMapperSynergizer.java (moved) (moved from trunk/synergizer/src/org/bridgedb/webservice/synergizer/IDMapperSynergizer.java) (view diffs)
• org.bridgedb.webservice.synergizer/src/org/bridgedb/webservice/synergizer/SynergizerStub.java (moved) (moved from trunk/synergizer/src/org/bridgedb/webservice/synergizer/SynergizerStub.java) (view diffs)
• org.bridgedb.webservice.synergizer/test (added)
• org.bridgedb.webservice.synergizer/test/org (added)
• org.bridgedb.webservice.synergizer/test/org/bridgedb (added)
• org.bridgedb.webservice.synergizer/test/org/bridgedb/webservice (added)
• org.bridgedb.webservice.synergizer/test/org/bridgedb/webservice/synergizer (added)
• org.bridgedb.webservice.synergizer/test/org/bridgedb/webservice/synergizer/Test.java (moved) (moved from trunk/synergizer/test/org/bridgedb/webservice/synergizer/Test.java) (view diffs)
• org.bridgedb/build-lib (added)
• org.bridgedb/build-lib/checkstyle-all-5.0.jar (moved) (moved from trunk/corelib/build-lib/checkstyle-all-5.0.jar) (view diffs)
• org.bridgedb/build-lib/junit.jar (moved) (moved from trunk/corelib/build-lib/junit.jar) (view diffs)
• org.bridgedb/build-lib/measure.jar (moved) (moved from trunk/corelib/build-lib/measure.jar) (view diffs)
• org.bridgedb/build.xml (copied) (copied from trunk/corelib/build.xml) (view diffs)
• org.bridgedb/checks.xml (moved) (moved from trunk/corelib/checks.xml) (view diffs)
• org.bridgedb/src (added)
• org.bridgedb/src/org (added)
• org.bridgedb/src/org/bridgedb (added)
• org.bridgedb/src/org/bridgedb/AbstractIDMapper.java (moved) (moved from trunk/corelib/src/org/bridgedb/AbstractIDMapper.java) (view diffs)
• org.bridgedb/src/org/bridgedb/AbstractIDMapperCapabilities.java (moved) (moved from trunk/corelib/src/org/bridgedb/AbstractIDMapperCapabilities.java) (view diffs)
• org.bridgedb/src/org/bridgedb/AttributeMapper.java (moved) (moved from trunk/corelib/src/org/bridgedb/AttributeMapper.java) (view diffs)
• org.bridgedb/src/org/bridgedb/BridgeDb.java (moved) (moved from trunk/corelib/src/org/bridgedb/BridgeDb.java) (view diffs)
• org.bridgedb/src/org/bridgedb/DataSource.java (moved) (moved from trunk/corelib/src/org/bridgedb/DataSource.java) (view diffs)
• org.bridgedb/src/org/bridgedb/DataSourcePatterns.java (moved) (moved from trunk/corelib/src/org/bridgedb/DataSourcePatterns.java) (view diffs)
• org.bridgedb/src/org/bridgedb/Driver.java (moved) (moved from trunk/corelib/src/org/bridgedb/Driver.java) (view diffs)
• org.bridgedb/src/org/bridgedb/IDMapper.java (moved) (moved from trunk/corelib/src/org/bridgedb/IDMapper.java) (view diffs)
• org.bridgedb/src/org/bridgedb/IDMapperCapabilities.java (moved) (moved from trunk/corelib/src/org/bridgedb/IDMapperCapabilities.java) (view diffs)
• org.bridgedb/src/org/bridgedb/IDMapperException.java (moved) (moved from trunk/corelib/src/org/bridgedb/IDMapperException.java) (view diffs)
• org.bridgedb/src/org/bridgedb/IDMapperStack.java (moved) (moved from trunk/corelib/src/org/bridgedb/IDMapperStack.java) (view diffs)
• org.bridgedb/src/org/bridgedb/Xref.java (moved) (moved from trunk/corelib/src/org/bridgedb/Xref.java) (view diffs)
• org.bridgedb/src/org/bridgedb/file (added)
• org.bridgedb/src/org/bridgedb/file/IDMapperFile.java (moved) (moved from trunk/corelib/src/org/bridgedb/file/IDMapperFile.java) (view diffs)
• org.bridgedb/src/org/bridgedb/file/IDMapperText.java (moved) (moved from trunk/corelib/src/org/bridgedb/file/IDMapperText.java) (view diffs)
• org.bridgedb/src/org/bridgedb/file/IDMappingReader.java (moved) (moved from trunk/corelib/src/org/bridgedb/file/IDMappingReader.java) (view diffs)
• org.bridgedb/src/org/bridgedb/file/IDMappingReaderFromDelimitedReader.java (moved) (moved from trunk/corelib/src/org/bridgedb/file/IDMappingReaderFromDelimitedReader.java) (view diffs)
• org.bridgedb/src/org/bridgedb/file/IDMappingReaderFromText.java (moved) (moved from trunk/corelib/src/org/bridgedb/file/IDMappingReaderFromText.java) (view diffs)
• org.bridgedb/src/org/bridgedb/file/package.html (moved) (moved from trunk/corelib/src/org/bridgedb/file/package.html) (view diffs)
• org.bridgedb/src/org/bridgedb/impl (added)
• org.bridgedb/src/org/bridgedb/impl/InternalUtils.java (moved) (moved from trunk/corelib/src/org/bridgedb/impl/InternalUtils.java) (view diffs)
• org.bridgedb/src/org/bridgedb/package.html (moved) (moved from trunk/corelib/src/org/bridgedb/package.html) (view diffs)
• org.bridgedb/src/org/bridgedb/webservice (added)
• org.bridgedb/src/org/bridgedb/webservice/IDMapperWebservice.java (moved) (moved from trunk/corelib/src/org/bridgedb/webservice/IDMapperWebservice.java) (view diffs)
• org.bridgedb/test (added)
• org.bridgedb/test/org (added)
• org.bridgedb/test/org/bridgedb (added)
• org.bridgedb/test/org/bridgedb/TestFile.java (moved) (moved from trunk/corelib/test/org/bridgedb/TestFile.java) (view diffs)
• org.bridgedb/version.props (moved) (moved from trunk/corelib/version.props) (view diffs)