Changeset 156 for trunk/corelib/test/org/bridgedb/TestFile.java

Timestamp:

08/14/09 21:50:23 (3 years ago)

Author:

jgao

Message:

IDMapperText & IDMapperBiomart driver update,
IDMapperBiomart constructor with mart

Files:

• trunk/corelib/test/org/bridgedb/TestFile.java (modified) (6 diffs)

trunk/corelib/test/org/bridgedb/TestFile.java

@@ -57 +57 @@
         
         public void testRead() throws IDMapperException, IOException
-        {       
+        {
                 IDMapperFile idMapper = new IDMapperText (YEAST_IDS.toURL());
 
@@ -67 +67 @@
         tgtDataSources.add(ENTREZ);
         tgtDataSources.add(EMBL);
-                
+
                 long start = System.currentTimeMillis();
         // mapID for the first time will trigger reading
@@ -75 +75 @@
                 System.out.println (delta);
                 measure.add ("timing::text file non-transitive", "" + delta, "msec");
-        
+
                 Set<Xref> expected = new HashSet<Xref>();
         expected.addAll (Arrays.asList(
-                        new Xref("YHR055C", ENS_YEAST), 
-                        new Xref("U00061", EMBL), 
+                        new Xref("YHR055C", ENS_YEAST),
+                        new Xref("U00061", EMBL),
                         new Xref("K02204", EMBL),
                         new Xref("AY558517", EMBL),
@@ -88 +88 @@
         Set<Xref> xrefs = mapXrefs.get(XREF1);
         assertEquals (expected, xrefs);
-        
+
         for (Xref xr : xrefs) {
             System.out.println(xr.getDataSource().getFullName() + ": " + xr.getId());
         }
-        
+
         }
 
         public void testTransitive() throws MalformedURLException, IDMapperException
         {
-                IDMapperFile idMapper = new IDMapperText (YEAST_IDS.toURL(), 
+                IDMapperFile idMapper = new IDMapperText (YEAST_IDS.toURL(),
                                 new char[] { '\t' },
                                 new char[] { ',' },
                                 true);
-                
+
         Set<Xref> srcXrefs = new HashSet<Xref>();
         srcXrefs.add(XREF1);
@@ -109 +109 @@
         tgtDataSources.add(ENTREZ);
         tgtDataSources.add(EMBL);
-        
+
                 long start = System.currentTimeMillis();
         // mapID for the first time will trigger reading
@@ -117 +117 @@
                 System.out.println (delta);
                 measure.add ("timing::text file transitive", "" + delta, "msec");
-                
+
                 System.out.println (mapXrefs);
         Set<Xref> xrefs = mapXrefs.get(XREF1);
-        
+
         for (Xref xr : xrefs) {
             System.out.println(xr.getDataSource().getFullName() + ": " + xr.getId());