| 1 | Compilation |
|---|
| 2 | ----------- |
|---|
| 3 | |
|---|
| 4 | If you've obtained the source code of BridgeDb, you should be |
|---|
| 5 | able to compile with a simple: |
|---|
| 6 | |
|---|
| 7 | ant |
|---|
| 8 | |
|---|
| 9 | or (experimental, makes not all jars) - |
|---|
| 10 | |
|---|
| 11 | mvn clean install |
|---|
| 12 | |
|---|
| 13 | Library dependencies |
|---|
| 14 | -------------------- |
|---|
| 15 | |
|---|
| 16 | If you don't use all mappers, you do not need to include all |
|---|
| 17 | libraries in the dist directory in your project. |
|---|
| 18 | |
|---|
| 19 | Here is a brief overview that will help you to find out |
|---|
| 20 | which ones you need. For questions, you can always contact our mailing list. |
|---|
| 21 | |
|---|
| 22 | org.bridgedb.jar - always needed. |
|---|
| 23 | This includes the tab-delimited file driver. |
|---|
| 24 | org.bridgedb.bio.jar - includes the BioDataSource enum, often needed |
|---|
| 25 | org.bridgedb.webservice.cronos.jar - needed for CRONOS webservice |
|---|
| 26 | org.bridgedb.webservice.synergizer.jar - needed for Synergizer webservice |
|---|
| 27 | org.bridgedb.webservice.picr.jar - needed for PICR webservice |
|---|
| 28 | org.bridgedb.server.jar - the BridgeRest SERVER, not needed if you only |
|---|
| 29 | want to access BridgeRest or BridgeWebservice as client |
|---|
| 30 | org.bridgedb.tools.batchmapper.jar - Contains the batchmapper command line tool |
|---|
| 31 | |
|---|
| 32 | org.bridgedb.jar and org.bridgedb.bio.jar do not need any other jar files to work. |
|---|
| 33 | Most of the other jar files in dist/ are part of the SOAP libraries needed only for |
|---|
| 34 | some of the webservices. Look in the lib directory and build.xml of the |
|---|
| 35 | respective mappers to find clues which libraries are needed by which service. |
|---|
| 36 | |
|---|
| 37 | Contact |
|---|
| 38 | ------- |
|---|
| 39 | |
|---|
| 40 | Website, wiki and bug tracker: http://www.bridgedb.org |
|---|
| 41 | Mailing list: http://groups.google.com/group/bridgedb-discuss/ |
|---|
| 42 | Source code can be obtained from http://svn.bigcat.unimaas.nl/bridgedb |
|---|
| 43 | |
|---|
| 44 | Authors |
|---|
| 45 | ------- |
|---|
| 46 | |
|---|
| 47 | BridgeDb and related tools are developed by |
|---|
| 48 | |
|---|
| 49 | Jianjiong Gao |
|---|
| 50 | Isaac Ho |
|---|
| 51 | Martijn van Iersel |
|---|
| 52 | Alex Pico |
|---|
| 53 | |
|---|
| 54 | OpenPhacts BridgeDB Team: |
|---|
| 55 | Christian Brenninkmeijer |
|---|
| 56 | Alasdair Gray |
|---|
| 57 | Egon Willighagen |
|---|
| 58 | |
|---|
| 59 | License |
|---|
| 60 | ------- |
|---|
| 61 | |
|---|
| 62 | BridgeDb is free and open source. It is available under |
|---|
| 63 | the conditions of the Apache 2.0 License. |
|---|
| 64 | See License-2.0.txt for details. |
|---|
